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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
729.8
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 305.9
2301
Female, age 85, both hemispheres
333.1
1984
Male, age 76, both hemispheres
321.7
2188
Female, age 91, both hemispheres
305.7
2090
Male, age 80, both hemispheres
262.9
Dorsal cochlear nucleus nTPM: 323.4
2058
Male, age 76, both hemispheres
393.2
2187
Female, age 91, both hemispheres
362.2
2370
Male, age 61, both hemispheres
332.2
2802
Male, age 74, right hemisphere
293.0
2378
Male, age 80, both hemispheres
236.2
Dorsal tegmental nucleus nTPM: 333.1
2083
Male, age 80, both hemispheres
466.6
2358
Male, age 61, both hemispheres
317.5
1936
Male, age 76, left hemisphere
307.7
2326
Male, age 74, both hemispheres
240.6
Dorsolateral tegmental area nTPM: 299.9
2654
Male, age 80, both hemispheres
427.9
2141
Male, age 76, both hemispheres
360.3
2751
Female, age 85, both hemispheres
341.2
2360
Male, age 74, both hemispheres
237.8
2337
Male, age 61, both hemispheres
132.1
Kolliker-Fuse nucleus nTPM: 470.5
2163
Male, age 80, both hemispheres
719.2
2793
Female, age 91, left hemisphere
461.4
2315
Male, age 76, right hemisphere
230.7
Lateral lemniscal nuclei nTPM: 546.2
2169
Male, age 76, both hemispheres
760.7
2453
Male, age 74, right hemisphere
712.5
2746
Female, age 85, left hemisphere
516.7
2036
Male, age 80, both hemispheres
407.6
2320
Female, age 91, left hemisphere
333.8
Lateral parabrachial nucleus nTPM: 362.0
2139
Female, age 85, right hemisphere
577.7
2013
Male, age 80, both hemispheres
365.8
2790
Male, age 61, both hemispheres
336.0
2792
Male, age 76, both hemispheres
168.4
Lateral vestibular nucleus nTPM: 494.6
2184
Male, age 76, both hemispheres
626.4
2311
Male, age 80, both hemispheres
362.9
Locus coeruleus nTPM: 689.7
2720
Male, age 74, both hemispheres
1189.5
2123
Female, age 91, both hemispheres
1091.9
2014
Male, age 55, unknown
558.0
1980
Male, age 76, both hemispheres
541.4
2317
Female, age 72, unknown
510.1
2162
Male, age 80, both hemispheres
509.8
2788
Male, age 74, unknown
427.5
Medial parabrachial nucleus nTPM: 415.7
2854
Male, age 80, both hemispheres
555.7
2156
Male, age 61, both hemispheres
472.4
2170
Female, age 91, both hemispheres
416.6
2786
Male, age 76, both hemispheres
368.3
2463
Female, age 85, right hemisphere
265.5
Medial periolivary nuclei nTPM: 506.8
2171
Female, age 85, both hemispheres
832.8
2063
Male, age 76, both hemispheres
665.4
2791
Male, age 74, right hemisphere
435.5
2458
Female, age 91, both hemispheres
322.1
2081
Male, age 80, both hemispheres
278.0
Motor facial nucleus nTPM: 581.1
2062
Male, age 76, both hemispheres
792.3
2365
Male, age 74, right hemisphere
690.8
2697
Female, age 85, both hemispheres
654.7
2327
Male, age 80, both hemispheres
597.9
2126
Male, age 61, both hemispheres
377.8
2795
Female, age 91, both hemispheres
373.0
Motor trigeminal nucleus nTPM: 455.3
2079
Male, age 80, both hemispheres
601.7
2560
Male, age 74, both hemispheres
457.9
2309
Male, age 76, both hemispheres
452.4
2335
Male, age 61, both hemispheres
449.8
2321
Female, age 91, both hemispheres
314.8
Nuclei of the trapezoid body nTPM: 642.2
2159
Male, age 61, both hemispheres
934.1
2735
Female, age 85, both hemispheres
748.7
1983
Male, age 76, both hemispheres
716.8
2166
Male, age 80, both hemispheres
484.9
2368
Female, age 91, both hemispheres
326.6
Nucleus raphe magnus nTPM: 729.8
2160
Male, age 61, both hemispheres
1048.5
2172
Female, age 85, both hemispheres
961.4
2455
Male, age 74, both hemispheres
927.4
2328
Male, age 80, both hemispheres
554.6
2051
Male, age 76, both hemispheres
526.7
2459
Female, age 91, both hemispheres
360.4
Paramedian reticular nucleus nTPM: 580.2
2313
Male, age 61, both hemispheres
711.5
2050
Female, age 85, both hemispheres
653.1
2057
Male, age 80, both hemispheres
645.0
2052
Male, age 76, both hemispheres
311.2
Pedunculopontine tegmental nucleus nTPM: 400.6
2334
Male, age 80, both hemispheres
493.1
1921
Female, age 85, both hemispheres
398.9
2338
Male, age 61, both hemispheres
309.9
Pontine nuclei nTPM: 570.9
2787
Female, age 85, both hemispheres
986.8
2727
Male, age 61, right hemisphere
826.7
1968
Male, age 76, left hemisphere
636.7
1863
Male, age 55, unknown
552.1
2109
Female, age 72, unknown
497.2
2454
Male, age 74, left hemisphere
404.9
2115
Male, age 80, left hemisphere
386.1
2319
Female, age 91, both hemispheres
276.7
Pontine raphe nucleus nTPM: 583.7
2122
Female, age 85, midline
644.8
2853
Male, age 76, midline
522.7
Posteroventral cochlear nucleus nTPM: 305.9
2752
Female, age 85, both hemispheres
526.7
2070
Male, age 76, both hemispheres
487.2
2371
Male, age 61, both hemispheres
264.0
2341
Male, age 80, both hemispheres
146.6
2135
Female, age 91, both hemispheres
105.1
Principal sensory trigeminal nucleus nTPM: 606.0
2158
Male, age 61, both hemispheres
931.9
2008
Male, age 80, left hemisphere
589.4
2324
Male, age 76, both hemispheres
563.8
2367
Female, age 91, left hemisphere
339.0
Reticular pontine nucleus, caudal nTPM: 457.5
2332
Male, age 80, right hemisphere
629.1
2092
Male, age 76, both hemispheres
528.0
2457
Female, age 91, both hemispheres
345.0
2559
Male, age 74, both hemispheres
327.8
Reticular pontine nucleus, oral nTPM: 435.7
2361
Male, age 74, both hemispheres
521.2
2012
Female, age 85, both hemispheres
499.4
1939
Male, age 80, both hemispheres
453.4
2167
Male, age 76, both hemispheres
404.0
2366
Female, age 91, both hemispheres
300.3
Reticulotegmental nucleus nTPM: 472.2
2325
Male, age 76, both hemispheres
580.4
2452
Male, age 74, both hemispheres
438.6
2322
Female, age 91, both hemispheres
436.7
2333
Male, age 80, both hemispheres
433.2
Spinal trigeminal nucleus, oral nTPM: 487.1
2164
Male, age 80, both hemispheres
607.9
2737
Female, age 85, both hemispheres
497.5
1978
Male, age 76, both hemispheres
355.8
Subcoeruleus area nTPM: 481.8
2323
Female, age 91, left hemisphere
736.7
1958
Male, age 80, both hemispheres
585.5
2089
Male, age 76, left hemisphere
439.6
2451
Male, age 74, both hemispheres
400.3
2369
Female, age 85, left hemisphere
246.7
Superior olive nTPM: 497.9
1875
Female, age 85, both hemispheres
652.9
2020
Male, age 76, both hemispheres
475.0
2329
Male, age 80, right hemisphere
468.9
2364
Male, age 74, right hemisphere
467.3
2561
Female, age 91, both hemispheres
425.5
Ventral periolivary nuclei nTPM: 595.9
2165
Male, age 80, both hemispheres
753.7
2130
Female, age 85, both hemispheres
751.4
2794
Female, age 91, left hemisphere
491.4
2023
Male, age 76, both hemispheres
387.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 476.9
2449
Male, age 74, both hemispheres
745.2
2840
Female, age 85, both hemispheres
565.5
1959
Male, age 76, both hemispheres
533.3
2161
Male, age 80, both hemispheres
406.6
2359
Male, age 61, both hemispheres
375.4
2456
Female, age 91, both hemispheres
235.1
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.5
Pig sample
Sample description
nTPM
Pons nTPM: 52.5
Samples: 4
Max nTPM: 88.7
Min nTPM: 14.9
Sample A
Female
14.9
Sample B
Female
48.4
Sample C
Male
88.7
Sample D
Male
57.9
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
