MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:415.1 nTPM
HPA Brain:511.6 nTPM
GTEx:415.1 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:56.9 nTPM
Mouse:107.5 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 511.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 279.2
1827 Male, age 72, unknown 397.8
2219 Male, age 76, both hemispheres 369.6
2411 Female, age 72, unknown 309.9
2019 Male, age 18, unknown 299.9
2666 Male, age 74, left hemisphere 290.8
2828 Female, age 72, unknown 270.5
1833 Male, age 53, unknown 232.8
1870 Female, age 42, unknown 230.3
1830 Male, age 51, unknown 206.9
2586 Male, age 75, left hemisphere 183.7
Dorsal raphe nucleus
nTPM: 322.3
2298 Female, age 72, unknown 403.6
2750 Male, age 76, both hemispheres 392.1
2047 Male, age 72, unknown 335.6
1828 Male, age 53, unknown 321.0
2016 Female, age 72, unknown 159.3
Inferior colliculus
nTPM: 229.0
2097 Female, age 72, unknown 239.2
1848 Female, age 42, unknown 231.2
2849 Male, age 72, unknown 230.9
1890 Male, age 53, unknown 214.9
Median raphe nucleus
nTPM: 511.6
2220 Male, age 76, midline 511.6
Periaquaductal grey, anterior
nTPM: 244.7
1795 Male, age 51, unknown 313.2
1947 Male, age 18, unknown 233.8
2502 Female, age 75, unknown 187.0
Periaquaductal grey, dorsal
nTPM: 217.3
2850 Male, age 76, both hemispheres 246.4
1831 Male, age 72, unknown 221.5
2464 Female, age 72, unknown 201.6
1840 Male, age 53, unknown 199.7
Periaquaductal grey, lateral
nTPM: 170.5
2140 Male, age 76, both hemispheres 183.2
2053 Male, age 18, unknown 165.0
2272 Male, age 74, both hemispheres 163.2
Pretectal area
nTPM: 335.5
1817 Female, age 42, unknown 518.5
1944 Female, age 72, unknown 489.8
2007 Male, age 72, unknown 464.1
1816 Male, age 51, unknown 453.1
2667 Female, age 75, unknown 421.0
1815 Male, age 53, unknown 382.5
2224 Female, age 72, unknown 314.6
2825 Male, age 18, unknown 226.7
2316 Male, age 76, right hemisphere 174.2
2407 Male, age 75, both hemispheres 127.5
2273 Male, age 74, both hemispheres 118.8
Red nucleus
nTPM: 215.1
2725 Female, age 75, unknown 333.1
2785 Male, age 18, unknown 291.2
1821 Female, age 72, unknown 250.9
2823 Male, age 76, right hemisphere 229.5
1954 Female, age 42, unknown 208.0
2584 Male, age 75, left hemisphere 202.0
2227 Male, age 72, unknown 191.2
2588 Male, age 74, left hemisphere 190.4
2769 Male, age 72, unknown 188.7
1865 Male, age 51, unknown 166.1
2503 Female, age 72, unknown 166.1
1904 Male, age 53, unknown 164.2
Substantia nigra
nTPM: 338.2
2665 Male, age 74, both hemispheres 635.2
1916 Female, age 42, unknown 463.4
1889 Female, age 72, unknown 447.8
1941 Male, age 53, unknown 413.0
1851 Male, age 51, unknown 331.9
2699 Male, age 18, unknown 265.0
2409 Female, age 72, unknown 256.4
2241 Male, age 72, unknown 228.7
2590 Female, age 75, unknown 204.3
2583 Male, age 75, right hemisphere 135.8
Superior colliculus
nTPM: 238.9
1895 Male, age 76, right hemisphere 351.6
2087 Female, age 72, unknown 346.6
1796 Male, age 53, unknown 294.5
2261 Male, age 18, unknown 242.4
2587 Male, age 74, left hemisphere 220.5
1839 Male, age 51, unknown 216.9
1913 Female, age 42, unknown 211.3
2668 Female, age 75, unknown 197.7
2664 Male, age 75, both hemispheres 161.0
1995 Male, age 72, unknown 146.6
Ventral tegmental area
nTPM: 315.4
2218 Male, age 76, both hemispheres 530.2
1915 Female, age 42, unknown 377.4
2410 Female, age 72, unknown 331.3
1942 Male, age 51, unknown 242.7
2021 Male, age 53, unknown 221.2
2223 Female, age 72, unknown 189.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 415.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 415.1
Samples: 139

Max nTPM: 1710.6
Min nTPM: 28.9
Std nTPM: 322.2
Median nTPM: 332.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1710.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1205.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1179.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1138.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1060.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1058.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 977.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 965.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 940.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 931.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 929.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.9
FF:10158-103A5 76 years, female 32.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 56.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.9
Samples: 4

Max nTPM: 100.4
Min nTPM: 7.6
Sample A Female 100.4
Sample B Female 37.9
Sample C Male 81.7
Sample D Male 7.6
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 37.6
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 37.6
Sample C Male 6.3
Sample D Male 30.9
Periaqueductal gray
nTPM: 28.1
Samples: 3

Max nTPM: 45.9
Min nTPM: 16.5
Sample B Female 16.5
Sample C Male 45.9
Sample D Male 21.9
Superior colliculi
nTPM: 14.6
Samples: 4

Max nTPM: 29.7
Min nTPM: 3.0
Sample A Female 29.7
Sample B Female 3.0
Sample C Male 3.8
Sample D Male 21.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 107.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 107.5
Samples: 4

Max nTPM: 119.1
Min nTPM: 93.2
Sample A Male 109.3
Sample B Male 108.3
Sample C Female 93.2
Sample D Female 119.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
68545693 Antisense, RP_050120_01_D05, Mouse strain C57BL/6J (56 days, male) 5.9
72081426 Antisense, RP_051017_01_C05, Mouse strain C57BL/6J (56 days, male) 5.2

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