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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

35.814
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:253.5 nTPM
HPA Brain:320.1 nTPM
GTEx:253.5 nTPM
FANTOM5:440.6 Scaled Tags Per Million
Pig:15.9 nTPM
Mouse:9.8 nTPM
Allen mouse:2.9 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA014404Antibody CAB001452Antibody CAB040581Antibody CAB080022
Glial cells Not detectedNot detectedMediumNot detected
Neuronal cells HighLowMediumMedium








HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA014404
Hippocampal formation mean intensity 35.814
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 27.373
Molecular layer of the dentate gyrus 25.850
Granular dentate gyrus 26.804
CA1 - oriens layer 11.573
CA1 - pyramidal layer 33.504
CA1 - radiatum layer 19.107
CA2 - oriens layer 27.895
CA2 - pyramidal layer 35.814
CA2 - radiatum layer 18.442
CA3 - oriens layer 19.128
CA3 - pyramidal layer 25.913
CA3 - radiatum layer 15.817
Stratum lucidum 20.528
Lacunosum moleculare 15.722
Subiculum 28.017

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

320.1
Sample id Sample description nTPM
Hippocampus
nTPM: 196.9
1898 Male, age 80, left hemisphere 275.9
2621 Female, age 67, right hemisphere 247.9
2529 Female, age 94, left hemisphere 218.9
1855 Male, age 76, left hemisphere 191.9
2148 Female, age 91, left hemisphere 170.6
1911 Female, age 85, right hemisphere 76.1
Dentate gyrus
nTPM: 179.3
2246 Female, age 85, both hemispheres 269.7
2530 Female, age 94, left hemisphere 253.3
1927 Female, age 91, both hemispheres 163.6
2528 Male, age 74, both hemispheres 159.3
2010 Male, age 76, both hemispheres 154.3
2531 Female, age 67, both hemispheres 75.5
Entorhinal gyrus
nTPM: 231.6
2613 Female, age 94, left hemisphere 312.3
1938 Female, age 85, left hemisphere 273.6
2764 Male, age 80, right hemisphere 273.2
1787 Male, age 76, left hemisphere 248.0
2686 Male, age 75, right hemisphere 178.5
2117 Female, age 91, right hemisphere 104.1
Hippocampus, CA1
nTPM: 179.8
2527 Male, age 74, both hemispheres 252.4
2082 Female, age 91, right hemisphere 229.0
2749 Male, age 80, left hemisphere 169.3
1873 Female, age 85, both hemispheres 168.5
2045 Male, age 76, both hemispheres 80.0
Hippocampus, CA2
nTPM: 218.0
2437 Female, age 94, left hemisphere 271.6
1940 Female, age 85, left hemisphere 255.3
1892 Male, age 76, both hemispheres 244.6
2249 Male, age 74, both hemispheres 192.5
2113 Female, age 91, right hemisphere 180.2
1963 Male, age 80, left hemisphere 164.0
Hippocampus, CA3
nTPM: 139.7
2861 Female, age 67, both hemispheres 222.5
1867 Male, age 76, both hemispheres 175.3
2436 Male, age 74, both hemispheres 151.2
1891 Female, age 85, both hemispheres 148.8
2620 Female, age 94, left hemisphere 80.2
2137 Male, age 80, left hemisphere 60.3
Parahippocampal cortex
nTPM: 261.5
2250 Female, age 67, right hemisphere 355.3
2245 Female, age 91, both hemispheres 336.0
1933 Female, age 85, both hemispheres 314.6
1990 Female, age 91, right hemisphere 297.8
2622 Female, age 67, right hemisphere 276.7
1850 Male, age 80, both hemispheres 264.8
2692 Male, age 74, both hemispheres 257.5
2693 Female, age 94, both hemispheres 192.8
2532 Female, age 72, left hemisphere 171.5
2018 Male, age 76, both hemispheres 148.1
Perirhinal gyrus
nTPM: 320.1
1847 Female, age 91, left hemisphere 603.3
2521 Female, age 94, right hemisphere 289.7
1794 Male, age 80, right hemisphere 288.8
1841 Female, age 85, right hemisphere 258.5
2848 Male, age 76, right hemisphere 160.1
Subiculum
nTPM: 193.3
2438 Female, age 94, left hemisphere 295.8
2619 Male, age 74, both hemispheres 292.6
1977 Female, age 85, both hemispheres 232.8
1901 Male, age 80, both hemispheres 161.9
2729 Female, age 91, right hemisphere 101.8
2042 Male, age 76, both hemispheres 75.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 253.5
Samples: 197

Max nTPM: 875.9
Min nTPM: 25.0
Std nTPM: 172.3
Median nTPM: 207.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 875.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 802.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 761.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 758.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 738.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 651.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 645.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 645.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 635.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 610.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 592.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 578.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 574.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 566.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 539.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 516.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 508.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 507.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 484.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 483.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 480.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 468.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 463.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 458.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 457.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 454.1
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 454.1
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 453.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 453.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 451.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 450.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 441.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 440.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 436.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 434.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 427.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 421.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 415.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 410.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 398.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 387.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 387.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 385.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 374.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 371.5
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 357.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 356.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 355.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 350.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 349.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 348.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 347.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 337.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 321.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 320.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 319.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 316.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 314.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 313.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 307.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 306.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 302.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 297.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 296.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 296.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 292.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 289.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 286.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 274.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 272.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 271.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 260.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 258.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 253.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 252.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 248.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 245.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 243.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 243.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 241.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 237.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 236.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 234.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 234.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 234.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 233.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 228.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 227.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 224.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 223.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 219.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 215.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 215.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 214.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 214.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 213.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 208.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 207.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 207.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 206.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 205.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 202.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 201.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 199.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 198.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 198.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 197.0
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 193.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 192.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 190.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 188.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 187.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 184.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 182.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 182.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 181.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 180.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 178.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 175.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 174.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 167.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 166.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 163.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 158.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 157.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 156.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 152.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 152.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 151.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 150.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 148.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 148.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 147.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 145.9
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 139.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 138.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 137.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 136.9
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 135.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 134.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 134.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 134.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 133.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 127.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 125.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 124.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 123.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 122.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 121.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 121.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 120.0
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 120.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 118.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 117.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 116.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 110.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 110.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 109.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 107.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 103.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 103.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 101.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 99.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 99.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 99.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 98.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 96.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 95.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 94.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 89.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 87.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 84.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 84.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 84.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 81.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 79.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 77.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 76.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 72.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 71.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 69.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 68.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 65.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 62.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 60.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 60.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 57.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 55.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 50.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 50.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 45.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 39.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 36.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 35.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 30.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 25.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 25.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

440.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 440.6
FF:10169-103B7 60 years, female 603.4
FF:10153-102I9 76 years, female 277.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.9
Pig sample Sample description nTPM
Subiculum
nTPM: 15.9
Samples: 4

Max nTPM: 19.1
Min nTPM: 12.0
Sample A Female 14.5
Sample B Female 12.0
Sample C Male 19.1
Sample D Male 17.9
Dorsal hippocampus
nTPM: 9.4
Samples: 4

Max nTPM: 10.9
Min nTPM: 6.2
Sample A Female 10.9
Sample B Female 9.4
Sample C Male 10.9
Sample D Male 6.2
Entorhinal cortex
nTPM: 8.3
Samples: 4

Max nTPM: 9.3
Min nTPM: 6.3
Sample A Female 9.0
Sample B Female 8.6
Sample C Male 9.3
Sample D Male 6.3
Ventral hippocampus
nTPM: 15.3
Samples: 4

Max nTPM: 24.1
Min nTPM: 9.7
Sample A Female 17.5
Sample B Female 9.9
Sample C Male 24.1
Sample D Male 9.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.1
Samples: 4

Max nTPM: 7.5
Min nTPM: 4.7
Sample A Male 5.6
Sample B Male 4.7
Sample C Female 7.5
Sample D Female 6.7
Hippocampal formation
nTPM: 9.8
Samples: 4

Max nTPM: 11.2
Min nTPM: 8.0
Sample A Male 10.3
Sample B Male 8.0
Sample C Female 9.8
Sample D Female 11.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.9
68545693 Antisense, RP_050120_01_D05, Mouse strain C57BL/6J (56 days, male) 5.2
72081426 Antisense, RP_051017_01_C05, Mouse strain C57BL/6J (56 days, male) 0.5

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