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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
723.6
Sample id
Sample description
nTPM
Amygdala nTPM: 675.3
2814
Male, age 76, right hemisphere
863.9
2514
Male, age 75, right hemisphere
764.8
2695
Female, age 67, right hemisphere
660.3
2517
Female, age 94, left hemisphere
595.5
1987
Female, age 91, left hemisphere
492.0
Basal amygdala nTPM: 521.0
2827
Female, age 67, right hemisphere
687.3
2110
Male, age 80, left hemisphere
594.4
2685
Female, age 94, left hemisphere
538.2
2609
Male, age 75, right hemisphere
516.7
1955
Male, age 76, both hemispheres
513.7
2243
Female, age 91, right hemisphere
275.6
Central amygdala nTPM: 582.4
1905
Male, age 76, both hemispheres
745.3
2826
Female, age 94, left hemisphere
605.5
2515
Male, age 75, right hemisphere
536.7
2239
Male, age 80, left hemisphere
535.3
2701
Female, age 91, right hemisphere
489.0
Corticomedial amygdala nTPM: 389.2
2428
Male, age 75, right hemisphere
566.9
2429
Female, age 94, left hemisphere
483.7
2535
Female, age 67, right hemisphere
400.5
2240
Male, age 76, both hemispheres
366.3
2829
Male, age 80, left hemisphere
325.7
2242
Female, age 91, right hemisphere
192.0
Lateral amygdala nTPM: 723.6
2830
Female, age 67, right hemisphere
960.1
2516
Male, age 75, right hemisphere
790.3
1883
Male, age 76, both hemispheres
761.5
2256
Male, age 80, left hemisphere
687.1
2534
Female, age 94, left hemisphere
632.5
2255
Female, age 91, right hemisphere
509.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
336.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 336.0
Samples: 152
Max nTPM: 1192.4
Min nTPM: 40.0
Std nTPM: 181.0
Median nTPM: 286.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
1192.4
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
1182.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
915.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
876.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
771.0
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
709.0
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
657.8
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
643.2
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
635.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
635.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
622.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
601.9
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
572.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
559.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
556.5
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
551.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
542.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
533.2
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
525.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
518.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
495.7
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
485.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
475.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
472.3
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
459.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
448.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
440.0
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
432.4
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
424.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
423.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
422.7
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
420.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
419.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
418.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
418.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
417.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
415.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
410.9
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
407.0
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
403.9
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
401.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
399.4
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
396.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
392.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
390.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
385.7
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
385.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
385.2
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
384.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
382.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
382.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
379.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
377.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
370.4
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
364.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
360.0
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
359.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
356.5
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
346.1
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
342.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
341.4
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
341.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
339.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
326.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
320.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
316.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
315.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
314.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
311.2
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
305.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
301.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
295.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
295.6
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
294.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
291.7
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
287.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
285.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
283.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
283.0
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
282.7
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
280.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
280.4
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
280.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
280.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
279.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
277.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
274.8
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
272.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
271.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
271.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
270.5
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
270.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
268.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
265.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
261.3
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
257.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
256.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
255.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
251.7
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
249.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
246.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
245.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
244.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
242.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
240.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
237.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
236.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
230.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
230.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
228.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
224.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
223.6
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
221.8
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
215.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
214.1
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
209.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
207.6
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
205.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
205.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
203.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
202.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
195.5
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
195.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
194.4
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
192.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
188.0
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
185.3
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
184.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
182.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
182.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
179.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
178.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
177.0
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
176.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
170.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
167.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
155.5
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
154.0
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
153.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
147.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
143.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
143.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
142.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
139.0
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
136.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
136.1
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
134.7
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
133.9
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
105.3
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
105.0
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
76.3
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
40.0
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
129.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 129.6
Samples: 4
Max nTPM: 188.7
Min nTPM: 104.8
Sample A
Male
111.2
Sample B
Male
104.8
Sample C
Female
188.7
Sample D
Female
113.6
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
