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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

83.344
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1459.5 nTPM
FANTOM5:867.9 Scaled Tags Per Million
Pig:907.2 nTPM
Allen mouse:14.9 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA023338
Medulla oblongata mean intensity 83.344
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 83.344
Raphe magnus nucleus 35.289
Cochlear nucleus 44.441
Lateral paragigantocellular nucleus 48.846
Raphe pallidus nucleus 57.824
Facial nucleus 60.850
Hypoglossal nucleus 27.606
Ambiguus nucleus 47.913
External cuneate nucleus 59.752
Inferior olivary nucleus 33.542
Raphe obscures nucleus 63.441
Dorsal motor nucleus of vagus 82.097

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1459.5
Sample id Sample description nTPM
Area postrema
nTPM: 897.8
2306 Male, age 80, both hemispheres 1358.1
2799 Male, age 61, both hemispheres 770.6
2054 Male, age 76, both hemispheres 564.6
Dorsal medullary reticular nucleus
nTPM: 1039.2
2373 Male, age 61, both hemispheres 1148.9
2040 Female, age 85, both hemispheres 1027.5
2088 Male, age 76, both hemispheres 941.2
Dorsal motor vagal complex
nTPM: 771.5
2185 Male, age 76, both hemispheres 1117.0
2000 Male, age 74, unknown 880.2
2643 Male, age 74, both hemispheres 832.8
2797 Male, age 61, both hemispheres 773.2
2133 Female, age 91, both hemispheres 742.8
2807 Female, age 85, both hemispheres 707.4
2844 Male, age 55, unknown 575.2
2813 Female, age 72, unknown 543.6
Gigantocellular reticular nuclei, medullary
nTPM: 1012.4
2314 Male, age 61, both hemispheres 1488.7
2387 Female, age 91, both hemispheres 1147.8
1876 Female, age 85, both hemispheres 1105.7
2310 Male, age 80, both hemispheres 895.1
2022 Male, age 76, right hemisphere 866.0
2462 Male, age 74, both hemispheres 570.9
Gigantocellular reticular nuclei, pars
nTPM: 859.0
2336 Male, age 61, both hemispheres 1020.5
2330 Male, age 80, both hemispheres 876.9
2706 Male, age 80, both hemispheres 849.4
2084 Female, age 85, both hemispheres 835.2
2168 Male, age 76, both hemispheres 713.4
Inferior olive
nTPM: 1131.8
2178 Male, age 61, both hemispheres 1454.7
2085 Female, age 85, both hemispheres 1119.7
2563 Male, age 74, both hemispheres 1075.0
2379 Male, age 80, both hemispheres 1048.3
2628 Female, age 91, both hemispheres 961.1
Lateral medullary reticular nucleus
nTPM: 1214.2
2852 Male, age 80, both hemispheres 1577.0
2374 Male, age 61, both hemispheres 1301.6
2305 Male, age 74, both hemispheres 1275.4
2190 Female, age 85, both hemispheres 1165.2
2044 Male, age 76, both hemispheres 1019.8
2804 Female, age 91, both hemispheres 946.4
Medial olivary nucleus
nTPM: 1350.8
1943 Male, age 61, both hemispheres 1841.4
1962 Male, age 76, both hemispheres 1388.4
2138 Female, age 91, both hemispheres 1132.1
2851 Male, age 80, both hemispheres 1041.5
Medial vestibular nucleus
nTPM: 845.9
2803 Female, age 91, both hemispheres 1054.7
2093 Male, age 80, both hemispheres 1043.1
2801 Male, age 74, both hemispheres 978.0
2624 Male, age 61, both hemispheres 776.4
2743 Female, age 85, both hemispheres 720.0
2134 Male, age 76, both hemispheres 503.1
Motor hypoglossal nucleus
nTPM: 933.0
2182 Male, age 80, both hemispheres 1226.1
2132 Female, age 85, both hemispheres 1218.6
2125 Female, age 91, both hemispheres 1199.4
2461 Male, age 61, both hemispheres 582.0
2277 Male, age 76, both hemispheres 438.9
Nucleus ambiguus
nTPM: 1458.5
2071 Male, age 76, both hemispheres 1684.2
2096 Female, age 85, both hemispheres 1232.9
Nucleus cuneatus
nTPM: 1077.8
2380 Male, age 80, both hemispheres 1437.0
2808 Female, age 85, both hemispheres 1229.1
2381 Male, age 80, both hemispheres 1186.7
2100 Male, age 76, both hemispheres 1183.3
2376 Male, age 61, both hemispheres 1099.8
2564 Male, age 74, both hemispheres 1005.0
2131 Male, age 76, both hemispheres 882.6
2805 Female, age 91, both hemispheres 849.3
2562 Male, age 61, both hemispheres 827.5
Nucleus gracilis
nTPM: 1261.0
2382 Male, age 80, both hemispheres 1623.2
2299 Female, age 85, both hemispheres 1147.4
2627 Male, age 74, both hemispheres 1012.5
Nucleus raphe obscurus
nTPM: 1459.5
2845 Female, age 85, midline 1550.4
2142 Male, age 76, midline 1422.5
2800 Male, age 61, midline 1405.5
Nucleus raphe pallidus
nTPM: 1284.3
2145 Male, age 76, midline 1478.1
1924 Male, age 61, midline 1390.4
2183 Male, age 80, midline 984.4
Nucleus tractus solitarii
nTPM: 487.1
2307 Male, age 80, both hemispheres 575.0
2656 Male, age 76, both hemispheres 543.0
2191 Female, age 85, both hemispheres 450.4
2144 Female, age 91, right hemisphere 380.1
Parvicellular reticular nuclei
nTPM: 910.6
2119 Male, age 80, both hemispheres 1060.4
2095 Male, age 76, both hemispheres 1027.9
2558 Male, age 74, both hemispheres 643.5
Parvicellular reticular nuclei, medullary
nTPM: 851.0
2189 Female, age 91, both hemispheres 901.4
2091 Female, age 85, both hemispheres 852.3
2181 Male, age 80, left hemisphere 799.4
Peritrigeminal nucleus
nTPM: 1110.4
2067 Female, age 85, both hemispheres 1176.2
2136 Male, age 76, both hemispheres 1078.6
2179 Male, age 61, both hemispheres 1076.3
Prepositus hypoglossal nucleus
nTPM: 921.5
2855 Female, age 85, right hemisphere 1114.0
2086 Male, age 80, both hemispheres 729.0
Spinal trigeminal nucleus, caudal
nTPM: 1071.6
2312 Male, age 61, both hemispheres 1278.9
2308 Male, age 80, both hemispheres 1185.7
2447 Male, age 76, both hemispheres 1080.1
2642 Male, age 74, both hemispheres 963.6
2390 Female, age 91, both hemispheres 849.4
Spinal trigeminal nucleus, interpolar
nTPM: 805.8
2386 Female, age 85, both hemispheres 966.4
2033 Male, age 80, both hemispheres 922.6
2389 Female, age 91, both hemispheres 846.1
2066 Male, age 76, right hemisphere 757.8
2625 Male, age 61, both hemispheres 535.9
Spinal vestibular nucleus
nTPM: 1068.0
2748 Male, age 76, both hemispheres 1437.7
2384 Male, age 74, both hemispheres 1183.9
2806 Female, age 85, both hemispheres 1089.6
2186 Female, age 91, both hemispheres 1047.8
2780 Male, age 80, both hemispheres 980.9
2796 Male, age 61, both hemispheres 668.1
Superior vestibular nucleus
nTPM: 806.0
2015 Male, age 80, both hemispheres 963.0
2061 Male, age 76, both hemispheres 823.3
2383 Male, age 74, both hemispheres 631.8
Ventral medullary reticular nucleus
nTPM: 1369.5
2372 Male, age 61, both hemispheres 1452.1
2060 Male, age 76, both hemispheres 1286.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1112.3
2118 Male, age 80, both hemispheres 1417.4
2180 Male, age 61, both hemispheres 1223.3
2741 Female, age 85, both hemispheres 1014.1
1986 Male, age 76, both hemispheres 1005.3
2302 Female, age 91, both hemispheres 901.4

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

867.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 867.9
FF:10038-101F2 18-64 years, mixed 1375.3
FF:10174-103C3 60 years, female 752.9
FF:10155-103A2 76 years, female 475.7

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

907.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 907.2
Samples: 4

Max nTPM: 1088.8
Min nTPM: 646.5
Sample A Female 918.0
Sample B Female 646.5
Sample C Male 975.4
Sample D Male 1088.8

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.9
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 14.9
77371841 Antisense, RP_070129_01_A04, Mouse strain C57BL/6J (56 days, male) 17.9
79488913 Antisense, RP_070129_01_A04, Mouse strain C57BL/6J (56 days, male) 16.7
1176 Antisense, RP_040407_02_H04, Mouse strain C57BL/6J (56 days, male) 12.0
1175 Antisense, RP_040407_02_H04, Mouse strain C57BL/6J (56 days, male) 11.8

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