MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:540.5 nTPM
HPA Brain:1287.6 nTPM
GTEx:540.5 nTPM
FANTOM5:1488.1 Scaled Tags Per Million
Pig:859.4 nTPM
Mouse:338.5 nTPM
Allen mouse:14.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1287.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 998.1
2411 Female, age 72, unknown 1386.2
1830 Male, age 51, unknown 1223.2
1870 Female, age 42, unknown 1197.6
1833 Male, age 53, unknown 1167.3
2019 Male, age 18, unknown 1150.8
2828 Female, age 72, unknown 991.0
2586 Male, age 75, left hemisphere 746.4
2666 Male, age 74, left hemisphere 733.5
1827 Male, age 72, unknown 725.7
2219 Male, age 76, both hemispheres 659.2
Dorsal raphe nucleus
nTPM: 718.9
2750 Male, age 76, both hemispheres 1303.3
2016 Female, age 72, unknown 795.7
1828 Male, age 53, unknown 649.8
2298 Female, age 72, unknown 459.5
2047 Male, age 72, unknown 386.4
Inferior colliculus
nTPM: 621.7
1890 Male, age 53, unknown 656.0
1848 Female, age 42, unknown 645.5
2849 Male, age 72, unknown 599.9
2097 Female, age 72, unknown 585.1
Median raphe nucleus
nTPM: 506.5
2220 Male, age 76, midline 506.5
Periaquaductal grey, anterior
nTPM: 561.3
2502 Female, age 75, unknown 639.5
1947 Male, age 18, unknown 580.7
1795 Male, age 51, unknown 463.9
Periaquaductal grey, dorsal
nTPM: 455.5
2464 Female, age 72, unknown 763.0
1831 Male, age 72, unknown 481.8
1840 Male, age 53, unknown 303.1
2850 Male, age 76, both hemispheres 274.1
Periaquaductal grey, lateral
nTPM: 501.6
2272 Male, age 74, both hemispheres 601.8
2053 Male, age 18, unknown 585.5
2140 Male, age 76, both hemispheres 317.4
Pretectal area
nTPM: 637.3
2316 Male, age 76, right hemisphere 956.0
1815 Male, age 53, unknown 906.6
2407 Male, age 75, both hemispheres 880.7
1817 Female, age 42, unknown 664.2
2007 Male, age 72, unknown 658.2
2825 Male, age 18, unknown 638.3
2273 Male, age 74, both hemispheres 569.3
2667 Female, age 75, unknown 512.6
2224 Female, age 72, unknown 493.5
1816 Male, age 51, unknown 366.0
1944 Female, age 72, unknown 365.2
Red nucleus
nTPM: 1287.6
1865 Male, age 51, unknown 1547.5
1904 Male, age 53, unknown 1535.5
1821 Female, age 72, unknown 1457.8
2823 Male, age 76, right hemisphere 1439.6
2769 Male, age 72, unknown 1432.4
2227 Male, age 72, unknown 1414.9
2785 Male, age 18, unknown 1329.6
2503 Female, age 72, unknown 1263.4
1954 Female, age 42, unknown 1188.7
2588 Male, age 74, left hemisphere 1104.6
2725 Female, age 75, unknown 869.5
2584 Male, age 75, left hemisphere 867.6
Substantia nigra
nTPM: 711.0
1851 Male, age 51, unknown 928.9
2590 Female, age 75, unknown 889.3
2583 Male, age 75, right hemisphere 882.9
2409 Female, age 72, unknown 854.0
1889 Female, age 72, unknown 740.0
2699 Male, age 18, unknown 664.8
2241 Male, age 72, unknown 598.6
1941 Male, age 53, unknown 554.4
1916 Female, age 42, unknown 538.1
2665 Male, age 74, both hemispheres 458.8
Superior colliculus
nTPM: 860.1
1995 Male, age 72, unknown 1383.4
1913 Female, age 42, unknown 1263.5
1895 Male, age 76, right hemisphere 1022.9
2668 Female, age 75, unknown 947.4
1839 Male, age 51, unknown 854.9
2587 Male, age 74, left hemisphere 850.0
1796 Male, age 53, unknown 688.3
2664 Male, age 75, both hemispheres 587.6
2261 Male, age 18, unknown 506.2
2087 Female, age 72, unknown 497.2
Ventral tegmental area
nTPM: 809.9
2223 Female, age 72, unknown 1051.9
2410 Female, age 72, unknown 1049.6
1942 Male, age 51, unknown 719.9
1915 Female, age 42, unknown 710.9
2021 Male, age 53, unknown 699.8
2218 Male, age 76, both hemispheres 627.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 540.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 540.5
Samples: 139

Max nTPM: 2222.5
Min nTPM: 152.6
Std nTPM: 331.8
Median nTPM: 447.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2222.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2072.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1676.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1419.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1174.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1162.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1160.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1148.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1085.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1084.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1073.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1488.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1488.1
FF:10158-103A5 76 years, female 1488.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 859.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 768.7
Samples: 4

Max nTPM: 1262.5
Min nTPM: 453.6
Sample A Female 790.3
Sample B Female 453.6
Sample C Male 568.5
Sample D Male 1262.5
Midbrain
nTPM: 859.4
Samples: 4

Max nTPM: 1887.9
Min nTPM: 357.9
Sample A Female 1887.9
Sample B Female 787.5
Sample C Male 357.9
Sample D Male 404.2
Periaqueductal gray
nTPM: 511.0
Samples: 3

Max nTPM: 632.0
Min nTPM: 367.8
Sample B Female 632.0
Sample C Male 367.8
Sample D Male 533.1
Superior colliculi
nTPM: 632.7
Samples: 4

Max nTPM: 785.0
Min nTPM: 338.5
Sample A Female 780.5
Sample B Female 338.5
Sample C Male 626.6
Sample D Male 785.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 338.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 338.6
Samples: 4

Max nTPM: 362.7
Min nTPM: 298.1
Sample A Male 362.7
Sample B Male 298.1
Sample C Female 330.7
Sample D Female 362.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.8
77371841 Antisense, RP_070129_01_A04, Mouse strain C57BL/6J (56 days, male) 17.5
79488913 Antisense, RP_070129_01_A04, Mouse strain C57BL/6J (56 days, male) 14.8
1175 Antisense, RP_040407_02_H04, Mouse strain C57BL/6J (56 days, male) 12.2
1176 Antisense, RP_040407_02_H04, Mouse strain C57BL/6J (56 days, male) 10.4

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