We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1170.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 1100.1
2188
Female, age 91, both hemispheres
1284.3
2090
Male, age 80, both hemispheres
1264.3
2301
Female, age 85, both hemispheres
1250.5
1984
Male, age 76, both hemispheres
601.5
Dorsal cochlear nucleus nTPM: 965.0
2378
Male, age 80, both hemispheres
1070.7
2187
Female, age 91, both hemispheres
1000.6
2802
Male, age 74, right hemisphere
995.9
2058
Male, age 76, both hemispheres
896.6
2370
Male, age 61, both hemispheres
861.3
Dorsal tegmental nucleus nTPM: 804.0
2083
Male, age 80, both hemispheres
1177.9
2326
Male, age 74, both hemispheres
862.9
1936
Male, age 76, left hemisphere
648.9
2358
Male, age 61, both hemispheres
526.5
Dorsolateral tegmental area nTPM: 856.4
2751
Female, age 85, both hemispheres
1268.5
2654
Male, age 80, both hemispheres
1080.6
2337
Male, age 61, both hemispheres
844.1
2360
Male, age 74, both hemispheres
605.3
2141
Male, age 76, both hemispheres
483.5
Kolliker-Fuse nucleus nTPM: 902.5
2793
Female, age 91, left hemisphere
1195.6
2163
Male, age 80, both hemispheres
842.5
2315
Male, age 76, right hemisphere
669.3
Lateral lemniscal nuclei nTPM: 865.3
2320
Female, age 91, left hemisphere
1085.9
2746
Female, age 85, left hemisphere
923.0
2169
Male, age 76, both hemispheres
831.6
2036
Male, age 80, both hemispheres
793.5
2453
Male, age 74, right hemisphere
692.8
Lateral parabrachial nucleus nTPM: 1092.6
2792
Male, age 76, both hemispheres
1552.4
2013
Male, age 80, both hemispheres
1126.8
2790
Male, age 61, both hemispheres
946.6
2139
Female, age 85, right hemisphere
744.4
Lateral vestibular nucleus nTPM: 905.8
2311
Male, age 80, both hemispheres
1010.3
2184
Male, age 76, both hemispheres
801.3
Locus coeruleus nTPM: 495.5
2162
Male, age 80, both hemispheres
634.3
2317
Female, age 72, unknown
573.8
2720
Male, age 74, both hemispheres
523.5
2123
Female, age 91, both hemispheres
462.9
2014
Male, age 55, unknown
448.8
2788
Male, age 74, unknown
441.4
1980
Male, age 76, both hemispheres
383.9
Medial parabrachial nucleus nTPM: 952.0
2463
Female, age 85, right hemisphere
1175.5
2170
Female, age 91, both hemispheres
1088.7
2786
Male, age 76, both hemispheres
885.8
2854
Male, age 80, both hemispheres
846.3
2156
Male, age 61, both hemispheres
763.5
Medial periolivary nuclei nTPM: 881.8
2081
Male, age 80, both hemispheres
1127.5
2791
Male, age 74, right hemisphere
935.0
2063
Male, age 76, both hemispheres
924.5
2458
Female, age 91, both hemispheres
922.5
2171
Female, age 85, both hemispheres
499.5
Motor facial nucleus nTPM: 935.0
2126
Male, age 61, both hemispheres
1339.8
2697
Female, age 85, both hemispheres
1016.1
2365
Male, age 74, right hemisphere
954.6
2062
Male, age 76, both hemispheres
810.4
2795
Female, age 91, both hemispheres
786.7
2327
Male, age 80, both hemispheres
702.4
Motor trigeminal nucleus nTPM: 887.5
2321
Female, age 91, both hemispheres
976.2
2560
Male, age 74, both hemispheres
927.3
2309
Male, age 76, both hemispheres
908.4
2079
Male, age 80, both hemispheres
849.7
2335
Male, age 61, both hemispheres
775.9
Nuclei of the trapezoid body nTPM: 804.6
2166
Male, age 80, both hemispheres
1025.9
2368
Female, age 91, both hemispheres
917.7
1983
Male, age 76, both hemispheres
843.4
2159
Male, age 61, both hemispheres
756.8
2735
Female, age 85, both hemispheres
479.1
Nucleus raphe magnus nTPM: 722.8
2459
Female, age 91, both hemispheres
1004.4
2051
Male, age 76, both hemispheres
955.9
2328
Male, age 80, both hemispheres
909.0
2455
Male, age 74, both hemispheres
704.8
2160
Male, age 61, both hemispheres
424.4
2172
Female, age 85, both hemispheres
338.1
Paramedian reticular nucleus nTPM: 883.8
2057
Male, age 80, both hemispheres
1106.2
2052
Male, age 76, both hemispheres
884.6
2050
Female, age 85, both hemispheres
775.4
2313
Male, age 61, both hemispheres
769.0
Pedunculopontine tegmental nucleus nTPM: 769.5
2334
Male, age 80, both hemispheres
864.4
1921
Female, age 85, both hemispheres
727.3
2338
Male, age 61, both hemispheres
717.0
Pontine nuclei nTPM: 988.6
2454
Male, age 74, left hemisphere
1327.5
2319
Female, age 91, both hemispheres
1226.7
2109
Female, age 72, unknown
1180.2
1968
Male, age 76, left hemisphere
1045.8
2115
Male, age 80, left hemisphere
995.3
1863
Male, age 55, unknown
956.9
2727
Male, age 61, right hemisphere
643.2
2787
Female, age 85, both hemispheres
533.6
Pontine raphe nucleus nTPM: 656.0
2853
Male, age 76, midline
679.0
2122
Female, age 85, midline
633.0
Posteroventral cochlear nucleus nTPM: 1170.5
2135
Female, age 91, both hemispheres
1543.2
2341
Male, age 80, both hemispheres
1310.7
2070
Male, age 76, both hemispheres
1226.4
2371
Male, age 61, both hemispheres
1012.8
2752
Female, age 85, both hemispheres
759.4
Principal sensory trigeminal nucleus nTPM: 773.7
2367
Female, age 91, left hemisphere
1103.5
2324
Male, age 76, both hemispheres
729.7
2008
Male, age 80, left hemisphere
695.6
2158
Male, age 61, both hemispheres
566.1
Reticular pontine nucleus, caudal nTPM: 1067.2
2559
Male, age 74, both hemispheres
1225.7
2457
Female, age 91, both hemispheres
1196.0
2092
Male, age 76, both hemispheres
1139.8
2332
Male, age 80, right hemisphere
707.1
Reticular pontine nucleus, oral nTPM: 1066.9
2366
Female, age 91, both hemispheres
1275.0
2361
Male, age 74, both hemispheres
1114.8
1939
Male, age 80, both hemispheres
1064.7
2167
Male, age 76, both hemispheres
981.7
2012
Female, age 85, both hemispheres
898.5
Reticulotegmental nucleus nTPM: 777.4
2322
Female, age 91, both hemispheres
890.9
2333
Male, age 80, both hemispheres
864.0
2452
Male, age 74, both hemispheres
859.9
2325
Male, age 76, both hemispheres
494.7
Spinal trigeminal nucleus, oral nTPM: 839.0
1978
Male, age 76, both hemispheres
964.1
2164
Male, age 80, both hemispheres
902.0
2737
Female, age 85, both hemispheres
650.9
Subcoeruleus area nTPM: 909.4
2369
Female, age 85, left hemisphere
1460.1
2089
Male, age 76, left hemisphere
929.8
1958
Male, age 80, both hemispheres
781.1
2451
Male, age 74, both hemispheres
740.6
2323
Female, age 91, left hemisphere
635.6
Superior olive nTPM: 974.3
2020
Male, age 76, both hemispheres
1291.3
2364
Male, age 74, right hemisphere
996.8
2329
Male, age 80, right hemisphere
936.6
2561
Female, age 91, both hemispheres
880.3
1875
Female, age 85, both hemispheres
766.4
Ventral periolivary nuclei nTPM: 816.2
2023
Male, age 76, both hemispheres
1267.9
2165
Male, age 80, both hemispheres
783.1
2794
Female, age 91, left hemisphere
656.8
2130
Female, age 85, both hemispheres
557.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 937.9
2456
Female, age 91, both hemispheres
1116.0
2359
Male, age 61, both hemispheres
1060.7
1959
Male, age 76, both hemispheres
971.0
2161
Male, age 80, both hemispheres
898.7
2840
Female, age 85, both hemispheres
815.9
2449
Male, age 74, both hemispheres
764.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
563.4
Pig sample
Sample description
nTPM
Pons nTPM: 563.4
Samples: 4
Max nTPM: 840.4
Min nTPM: 401.5
Sample A
Female
446.4
Sample B
Female
401.5
Sample C
Male
565.2
Sample D
Male
840.4
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
