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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:684.8 nTPM
HPA Brain:572.4 nTPM
GTEx:684.8 nTPM
FANTOM5:658.6 Scaled Tags Per Million
Pig:46.1 nTPM
Mouse:475.8 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

572.4
Sample id Sample description nTPM
Amygdala
nTPM: 539.2
2695 Female, age 67, right hemisphere 676.9
1987 Female, age 91, left hemisphere 546.4
2514 Male, age 75, right hemisphere 533.1
2517 Female, age 94, left hemisphere 508.2
2814 Male, age 76, right hemisphere 431.5
Basal amygdala
nTPM: 454.4
2827 Female, age 67, right hemisphere 683.4
2110 Male, age 80, left hemisphere 482.8
2609 Male, age 75, right hemisphere 446.0
2685 Female, age 94, left hemisphere 422.1
1955 Male, age 76, both hemispheres 362.4
2243 Female, age 91, right hemisphere 329.6
Central amygdala
nTPM: 517.8
2826 Female, age 94, left hemisphere 876.4
2515 Male, age 75, right hemisphere 552.8
1905 Male, age 76, both hemispheres 429.7
2239 Male, age 80, left hemisphere 394.0
2701 Female, age 91, right hemisphere 336.2
Corticomedial amygdala
nTPM: 397.8
2535 Female, age 67, right hemisphere 474.2
2428 Male, age 75, right hemisphere 472.3
2829 Male, age 80, left hemisphere 419.6
2242 Female, age 91, right hemisphere 344.7
2429 Female, age 94, left hemisphere 341.7
2240 Male, age 76, both hemispheres 334.6
Lateral amygdala
nTPM: 572.4
2830 Female, age 67, right hemisphere 909.9
2516 Male, age 75, right hemisphere 641.3
2534 Female, age 94, left hemisphere 635.1
2256 Male, age 80, left hemisphere 462.4
1883 Male, age 76, both hemispheres 396.8
2255 Female, age 91, right hemisphere 388.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

684.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 684.8
Samples: 152

Max nTPM: 1684.6
Min nTPM: 293.4
Std nTPM: 264.5
Median nTPM: 625.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1684.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1477.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1368.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1325.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1312.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1299.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1281.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1278.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1275.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1264.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1206.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1197.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1132.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1132.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1131.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1124.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1121.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1077.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1068.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1012.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1008.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 932.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 931.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 929.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 887.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 846.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 843.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 836.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 824.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 816.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 813.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 809.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 807.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 802.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 802.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 797.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 796.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 791.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 790.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 788.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 784.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 752.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 749.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 747.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 746.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 743.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 733.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 730.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 729.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 725.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 722.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 718.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 714.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 713.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 710.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 710.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 709.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 704.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 703.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 697.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 694.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 678.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 675.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 670.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 669.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 661.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 657.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 655.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 652.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 650.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 645.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 641.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 639.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 636.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 631.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 625.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 625.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 620.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 608.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 607.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 606.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 604.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 601.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 600.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 596.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 595.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 592.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 591.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 587.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 585.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 585.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 580.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 578.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 578.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 578.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 577.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 575.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 570.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 562.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 552.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 544.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 541.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 539.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 535.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 532.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 528.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 525.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 525.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 524.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 514.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 509.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 505.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 495.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 494.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 493.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 492.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 489.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 489.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 489.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 489.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 487.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 485.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 483.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 470.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 469.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 468.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 467.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 461.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 457.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 443.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 439.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 432.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 430.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 429.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 417.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 413.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 405.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 396.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 396.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 395.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 386.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 382.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 375.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 368.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 358.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 345.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 340.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 335.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 331.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 317.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 314.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 293.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

658.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 658.6
FF:10151-102I7 76 years, female 658.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.1
Pig sample Sample description nTPM
Amygdala
nTPM: 46.1
Samples: 4

Max nTPM: 61.5
Min nTPM: 25.3
Sample A Female 61.5
Sample B Female 48.5
Sample C Male 49.1
Sample D Male 25.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

475.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 475.8
Samples: 4

Max nTPM: 560.0
Min nTPM: 441.3
Sample A Male 449.5
Sample B Male 441.3
Sample C Female 560.0
Sample D Female 452.2

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