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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:643.7 nTPM
FANTOM5:748.0 Scaled Tags Per Million
Pig:64.3 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

643.7
Sample id Sample description nTPM
Area postrema
nTPM: 584.5
2306 Male, age 80, both hemispheres 701.0
2799 Male, age 61, both hemispheres 654.1
2054 Male, age 76, both hemispheres 398.4
Dorsal medullary reticular nucleus
nTPM: 465.0
2373 Male, age 61, both hemispheres 509.7
2040 Female, age 85, both hemispheres 458.7
2088 Male, age 76, both hemispheres 426.8
Dorsal motor vagal complex
nTPM: 546.0
2797 Male, age 61, both hemispheres 775.3
2643 Male, age 74, both hemispheres 635.1
2807 Female, age 85, both hemispheres 585.1
2133 Female, age 91, both hemispheres 488.3
2844 Male, age 55, unknown 485.5
2000 Male, age 74, unknown 483.8
2185 Male, age 76, both hemispheres 481.4
2813 Female, age 72, unknown 433.5
Gigantocellular reticular nuclei, medullary
nTPM: 473.8
2314 Male, age 61, both hemispheres 571.0
2022 Male, age 76, right hemisphere 477.2
1876 Female, age 85, both hemispheres 474.0
2310 Male, age 80, both hemispheres 465.5
2387 Female, age 91, both hemispheres 445.5
2462 Male, age 74, both hemispheres 409.3
Gigantocellular reticular nuclei, pars
nTPM: 416.6
2084 Female, age 85, both hemispheres 480.0
2706 Male, age 80, both hemispheres 418.4
2336 Male, age 61, both hemispheres 416.0
2330 Male, age 80, both hemispheres 391.7
2168 Male, age 76, both hemispheres 376.9
Inferior olive
nTPM: 542.8
2085 Female, age 85, both hemispheres 573.3
2563 Male, age 74, both hemispheres 572.9
2178 Male, age 61, both hemispheres 571.2
2379 Male, age 80, both hemispheres 515.1
2628 Female, age 91, both hemispheres 481.4
Lateral medullary reticular nucleus
nTPM: 549.4
2852 Male, age 80, both hemispheres 689.0
2190 Female, age 85, both hemispheres 586.4
2804 Female, age 91, both hemispheres 555.8
2305 Male, age 74, both hemispheres 545.3
2374 Male, age 61, both hemispheres 463.9
2044 Male, age 76, both hemispheres 456.0
Medial olivary nucleus
nTPM: 643.7
1943 Male, age 61, both hemispheres 715.9
1962 Male, age 76, both hemispheres 713.8
2138 Female, age 91, both hemispheres 631.1
2851 Male, age 80, both hemispheres 514.1
Medial vestibular nucleus
nTPM: 452.8
2743 Female, age 85, both hemispheres 491.5
2093 Male, age 80, both hemispheres 484.9
2803 Female, age 91, both hemispheres 466.6
2801 Male, age 74, both hemispheres 431.2
2624 Male, age 61, both hemispheres 427.8
2134 Male, age 76, both hemispheres 414.6
Motor hypoglossal nucleus
nTPM: 476.0
2182 Male, age 80, both hemispheres 593.1
2132 Female, age 85, both hemispheres 548.7
2125 Female, age 91, both hemispheres 517.4
2277 Male, age 76, both hemispheres 422.8
2461 Male, age 61, both hemispheres 298.1
Nucleus ambiguus
nTPM: 561.2
2071 Male, age 76, both hemispheres 659.6
2096 Female, age 85, both hemispheres 462.8
Nucleus cuneatus
nTPM: 486.3
2808 Female, age 85, both hemispheres 598.8
2564 Male, age 74, both hemispheres 519.8
2380 Male, age 80, both hemispheres 508.9
2805 Female, age 91, both hemispheres 504.6
2562 Male, age 61, both hemispheres 494.4
2376 Male, age 61, both hemispheres 478.3
2381 Male, age 80, both hemispheres 458.4
2100 Male, age 76, both hemispheres 421.9
2131 Male, age 76, both hemispheres 391.6
Nucleus gracilis
nTPM: 580.5
2299 Female, age 85, both hemispheres 642.0
2382 Male, age 80, both hemispheres 597.4
2627 Male, age 74, both hemispheres 502.0
Nucleus raphe obscurus
nTPM: 614.2
2142 Male, age 76, midline 687.9
2800 Male, age 61, midline 577.9
2845 Female, age 85, midline 576.6
Nucleus raphe pallidus
nTPM: 614.1
1924 Male, age 61, midline 699.1
2145 Male, age 76, midline 578.4
2183 Male, age 80, midline 564.6
Nucleus tractus solitarii
nTPM: 471.1
2191 Female, age 85, both hemispheres 557.7
2144 Female, age 91, right hemisphere 483.3
2307 Male, age 80, both hemispheres 422.4
2656 Male, age 76, both hemispheres 421.0
Parvicellular reticular nuclei
nTPM: 478.0
2119 Male, age 80, both hemispheres 534.5
2095 Male, age 76, both hemispheres 513.7
2558 Male, age 74, both hemispheres 385.8
Parvicellular reticular nuclei, medullary
nTPM: 477.5
2091 Female, age 85, both hemispheres 501.9
2189 Female, age 91, both hemispheres 467.3
2181 Male, age 80, left hemisphere 463.4
Peritrigeminal nucleus
nTPM: 593.6
2067 Female, age 85, both hemispheres 732.6
2136 Male, age 76, both hemispheres 582.3
2179 Male, age 61, both hemispheres 465.8
Prepositus hypoglossal nucleus
nTPM: 555.4
2086 Male, age 80, both hemispheres 571.3
2855 Female, age 85, right hemisphere 539.5
Spinal trigeminal nucleus, caudal
nTPM: 469.4
2642 Male, age 74, both hemispheres 527.9
2308 Male, age 80, both hemispheres 515.2
2447 Male, age 76, both hemispheres 454.3
2312 Male, age 61, both hemispheres 430.5
2390 Female, age 91, both hemispheres 419.2
Spinal trigeminal nucleus, interpolar
nTPM: 452.9
2033 Male, age 80, both hemispheres 509.0
2066 Male, age 76, right hemisphere 496.1
2386 Female, age 85, both hemispheres 470.4
2389 Female, age 91, both hemispheres 420.1
2625 Male, age 61, both hemispheres 368.7
Spinal vestibular nucleus
nTPM: 557.6
2384 Male, age 74, both hemispheres 691.1
2780 Male, age 80, both hemispheres 568.2
2748 Male, age 76, both hemispheres 561.5
2806 Female, age 85, both hemispheres 529.3
2796 Male, age 61, both hemispheres 505.0
2186 Female, age 91, both hemispheres 490.9
Superior vestibular nucleus
nTPM: 535.2
2015 Male, age 80, both hemispheres 577.8
2061 Male, age 76, both hemispheres 535.2
2383 Male, age 74, both hemispheres 492.6
Ventral medullary reticular nucleus
nTPM: 519.0
2372 Male, age 61, both hemispheres 552.2
2060 Male, age 76, both hemispheres 485.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 578.8
2118 Male, age 80, both hemispheres 684.8
2302 Female, age 91, both hemispheres 569.1
2741 Female, age 85, both hemispheres 563.7
1986 Male, age 76, both hemispheres 559.4
2180 Male, age 61, both hemispheres 517.0

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

748.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 748.0
FF:10174-103C3 60 years, female 895.9
FF:10038-101F2 18-64 years, mixed 756.1
FF:10155-103A2 76 years, female 592.2

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 64.3
Samples: 4

Max nTPM: 78.2
Min nTPM: 51.8
Sample A Female 51.8
Sample B Female 55.7
Sample C Male 78.2
Sample D Male 71.4

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