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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:704.7 nTPM
HPA Brain:769.1 nTPM
GTEx:704.7 nTPM
FANTOM5:1191.2 Scaled Tags Per Million
Pig:77.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

769.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 583.4
1981 Female, age 72, midline 783.7
2565 Male, age 75, midline 622.9
2194 Female, age 79, both hemispheres 526.5
2048 Male, age 55, midline 504.2
2816 Male, age 47, midline 479.7
Cervical spinal cord, dorsal horn
nTPM: 606.9
2173 Female, age 72, unknown 844.9
2069 Male, age 47, both hemispheres 753.3
2296 Male, age 66, both hemispheres 695.6
1877 Male, age 55, unknown 585.2
2721 Male, age 90, both hemispheres 397.1
2297 Male, age 75, both hemispheres 365.5
Cervical spinal cord, ventral horn
nTPM: 769.1
2480 Male, age 75, both hemispheres 1040.4
2809 Male, age 90, both hemispheres 984.6
2098 Female, age 72, unknown 982.6
2068 Male, age 55, unknown 660.4
2295 Male, age 66, both hemispheres 566.4
2820 Female, age 79, both hemispheres 380.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

704.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 704.7
Samples: 159

Max nTPM: 1345.1
Min nTPM: 243.6
Std nTPM: 218.0
Median nTPM: 671.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1345.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1301.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1299.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1295.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1286.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1155.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1153.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1127.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1095.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1085.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1082.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1073.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1063.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1007.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1004.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 991.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 985.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 975.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 964.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 963.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 953.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 950.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 949.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 945.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 939.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 932.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 931.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 922.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 913.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 912.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 903.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 898.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 898.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 895.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 879.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 867.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 860.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 857.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 855.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 849.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 834.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 824.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 824.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 819.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 811.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 809.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 808.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 796.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 789.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 766.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 762.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 760.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 756.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 749.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 745.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 736.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 733.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 733.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 731.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 726.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 722.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 712.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 710.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 710.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 709.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 706.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 705.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 705.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 697.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 696.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 696.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 694.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 691.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 686.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 685.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 684.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 682.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 675.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 674.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 671.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 669.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 668.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 663.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 661.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 661.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 659.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 658.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 639.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 638.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 635.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 633.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 632.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 631.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 628.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 620.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 614.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 612.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 611.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 608.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 607.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 597.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 596.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 589.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 588.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 588.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 587.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 586.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 581.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 579.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 575.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 572.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 570.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 567.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 563.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 562.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 557.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 550.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 546.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 544.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 542.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 542.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 540.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 537.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 535.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 534.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 534.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 530.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 525.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 520.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 519.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 517.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 517.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 516.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 509.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 499.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 498.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 498.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 496.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 496.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 489.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 482.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 477.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 473.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 467.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 448.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 439.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 437.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 427.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 424.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 420.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 406.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 395.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 391.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 381.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 370.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 364.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 333.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 288.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 243.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1191.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1191.2
FF:10181-103D1 60 years, female 1456.8
FF:10159-103A6 76 years, female 925.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 77.2
Samples: 4

Max nTPM: 117.2
Min nTPM: 53.2
Sample A Female 58.4
Sample B Female 79.9
Sample C Male 117.2
Sample D Male 53.2
Ventral spinal cord
nTPM: 70.3
Samples: 4

Max nTPM: 86.3
Min nTPM: 57.4
Sample A Female 57.4
Sample B Female 72.0
Sample C Male 86.3
Sample D Male 65.5

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