MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:730.8 nTPM
HPA Brain:536.2 nTPM
GTEx:730.8 nTPM
FANTOM5:943.0 Scaled Tags Per Million
Pig:67.4 nTPM
Mouse:221.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 536.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 466.5
2586 Male, age 75, left hemisphere 527.2
2828 Female, age 72, unknown 517.0
2666 Male, age 74, left hemisphere 515.7
2411 Female, age 72, unknown 504.2
2019 Male, age 18, unknown 490.9
1870 Female, age 42, unknown 485.3
1830 Male, age 51, unknown 443.8
1833 Male, age 53, unknown 433.2
1827 Male, age 72, unknown 392.8
2219 Male, age 76, both hemispheres 355.1
Dorsal raphe nucleus
nTPM: 481.7
2298 Female, age 72, unknown 574.1
2016 Female, age 72, unknown 498.6
2750 Male, age 76, both hemispheres 484.6
1828 Male, age 53, unknown 456.3
2047 Male, age 72, unknown 395.1
Inferior colliculus
nTPM: 417.7
1890 Male, age 53, unknown 462.7
2097 Female, age 72, unknown 449.6
1848 Female, age 42, unknown 397.7
2849 Male, age 72, unknown 360.6
Median raphe nucleus
nTPM: 407.7
2220 Male, age 76, midline 407.7
Periaquaductal grey, anterior
nTPM: 496.3
2502 Female, age 75, unknown 609.1
1795 Male, age 51, unknown 457.2
1947 Male, age 18, unknown 422.6
Periaquaductal grey, dorsal
nTPM: 412.7
1840 Male, age 53, unknown 459.0
1831 Male, age 72, unknown 428.3
2464 Female, age 72, unknown 394.4
2850 Male, age 76, both hemispheres 369.2
Periaquaductal grey, lateral
nTPM: 422.4
2053 Male, age 18, unknown 448.2
2140 Male, age 76, both hemispheres 421.7
2272 Male, age 74, both hemispheres 397.4
Pretectal area
nTPM: 418.3
2316 Male, age 76, right hemisphere 497.2
2224 Female, age 72, unknown 449.3
2007 Male, age 72, unknown 435.5
1817 Female, age 42, unknown 433.7
2273 Male, age 74, both hemispheres 429.8
1815 Male, age 53, unknown 429.5
2825 Male, age 18, unknown 407.7
1816 Male, age 51, unknown 402.4
1944 Female, age 72, unknown 389.2
2407 Male, age 75, both hemispheres 384.3
2667 Female, age 75, unknown 342.3
Red nucleus
nTPM: 517.9
2503 Female, age 72, unknown 659.4
1904 Male, age 53, unknown 548.5
1865 Male, age 51, unknown 547.7
2227 Male, age 72, unknown 543.0
1821 Female, age 72, unknown 530.9
2769 Male, age 72, unknown 526.3
2725 Female, age 75, unknown 522.0
2785 Male, age 18, unknown 505.7
2588 Male, age 74, left hemisphere 481.3
2584 Male, age 75, left hemisphere 464.0
1954 Female, age 42, unknown 458.7
2823 Male, age 76, right hemisphere 427.5
Substantia nigra
nTPM: 536.2
1851 Male, age 51, unknown 643.4
2699 Male, age 18, unknown 626.6
2665 Male, age 74, both hemispheres 598.1
2241 Male, age 72, unknown 589.6
1916 Female, age 42, unknown 574.0
2409 Female, age 72, unknown 573.3
2590 Female, age 75, unknown 504.4
1889 Female, age 72, unknown 449.7
1941 Male, age 53, unknown 410.8
2583 Male, age 75, right hemisphere 392.2
Superior colliculus
nTPM: 476.7
1995 Male, age 72, unknown 593.0
2587 Male, age 74, left hemisphere 580.4
1913 Female, age 42, unknown 532.9
1796 Male, age 53, unknown 486.2
2668 Female, age 75, unknown 477.7
2664 Male, age 75, both hemispheres 442.1
1839 Male, age 51, unknown 431.6
2261 Male, age 18, unknown 426.5
2087 Female, age 72, unknown 425.9
1895 Male, age 76, right hemisphere 370.8
Ventral tegmental area
nTPM: 514.8
1915 Female, age 42, unknown 623.9
2223 Female, age 72, unknown 538.3
2021 Male, age 53, unknown 523.8
1942 Male, age 51, unknown 499.5
2410 Female, age 72, unknown 492.7
2218 Male, age 76, both hemispheres 410.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 730.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 730.8
Samples: 139

Max nTPM: 2763.0
Min nTPM: 256.6
Std nTPM: 321.3
Median nTPM: 667.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2763.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2072.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1539.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1522.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1369.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1251.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1236.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1200.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1138.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1128.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1124.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 943.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 943.0
FF:10158-103A5 76 years, female 943.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 67.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.4
Samples: 4

Max nTPM: 92.1
Min nTPM: 53.5
Sample A Female 92.1
Sample B Female 66.1
Sample C Male 57.9
Sample D Male 53.5
Midbrain
nTPM: 63.8
Samples: 4

Max nTPM: 98.9
Min nTPM: 38.6
Sample A Female 98.9
Sample B Female 69.3
Sample C Male 48.2
Sample D Male 38.6
Periaqueductal gray
nTPM: 51.4
Samples: 3

Max nTPM: 57.9
Min nTPM: 43.6
Sample B Female 52.7
Sample C Male 57.9
Sample D Male 43.6
Superior colliculi
nTPM: 65.1
Samples: 4

Max nTPM: 81.0
Min nTPM: 53.0
Sample A Female 81.0
Sample B Female 67.0
Sample C Male 59.2
Sample D Male 53.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 221.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 221.3
Samples: 4

Max nTPM: 275.2
Min nTPM: 195.8
Sample A Male 275.2
Sample B Male 195.8
Sample C Female 199.4
Sample D Female 214.7

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