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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
606.6
nTPM
FANTOM5:
908.5
Scaled Tags Per Million
Pig:
71.0
nTPM
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
606.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 525.2
2090
Male, age 80, both hemispheres
656.6
2188
Female, age 91, both hemispheres
609.1
1984
Male, age 76, both hemispheres
432.9
2301
Female, age 85, both hemispheres
402.3
Dorsal cochlear nucleus nTPM: 520.9
2187
Female, age 91, both hemispheres
580.7
2802
Male, age 74, right hemisphere
539.7
2370
Male, age 61, both hemispheres
525.1
2378
Male, age 80, both hemispheres
501.4
2058
Male, age 76, both hemispheres
457.4
Dorsal tegmental nucleus nTPM: 513.0
2083
Male, age 80, both hemispheres
573.9
2326
Male, age 74, both hemispheres
550.9
2358
Male, age 61, both hemispheres
465.1
1936
Male, age 76, left hemisphere
462.0
Dorsolateral tegmental area nTPM: 532.6
2337
Male, age 61, both hemispheres
627.0
2654
Male, age 80, both hemispheres
621.8
2751
Female, age 85, both hemispheres
540.6
2360
Male, age 74, both hemispheres
483.3
2141
Male, age 76, both hemispheres
390.4
Kolliker-Fuse nucleus nTPM: 528.6
2315
Male, age 76, right hemisphere
649.4
2163
Male, age 80, both hemispheres
483.8
2793
Female, age 91, left hemisphere
452.5
Lateral lemniscal nuclei nTPM: 402.4
2746
Female, age 85, left hemisphere
452.3
2320
Female, age 91, left hemisphere
406.9
2453
Male, age 74, right hemisphere
392.0
2169
Male, age 76, both hemispheres
385.0
2036
Male, age 80, both hemispheres
375.9
Lateral parabrachial nucleus nTPM: 539.5
2792
Male, age 76, both hemispheres
587.8
2013
Male, age 80, both hemispheres
574.6
2139
Female, age 85, right hemisphere
505.8
2790
Male, age 61, both hemispheres
489.7
Lateral vestibular nucleus nTPM: 480.7
2311
Male, age 80, both hemispheres
551.4
2184
Male, age 76, both hemispheres
409.9
Locus coeruleus nTPM: 423.7
2123
Female, age 91, both hemispheres
464.8
2162
Male, age 80, both hemispheres
458.5
2720
Male, age 74, both hemispheres
452.1
2317
Female, age 72, unknown
442.1
2014
Male, age 55, unknown
405.5
1980
Male, age 76, both hemispheres
404.6
2788
Male, age 74, unknown
338.0
Medial parabrachial nucleus nTPM: 494.9
2170
Female, age 91, both hemispheres
614.9
2463
Female, age 85, right hemisphere
504.7
2156
Male, age 61, both hemispheres
473.4
2786
Male, age 76, both hemispheres
447.0
2854
Male, age 80, both hemispheres
434.6
Medial periolivary nuclei nTPM: 448.2
2081
Male, age 80, both hemispheres
566.7
2063
Male, age 76, both hemispheres
498.7
2458
Female, age 91, both hemispheres
432.6
2791
Male, age 74, right hemisphere
400.2
2171
Female, age 85, both hemispheres
342.8
Motor facial nucleus nTPM: 417.5
2126
Male, age 61, both hemispheres
510.8
2062
Male, age 76, both hemispheres
460.4
2795
Female, age 91, both hemispheres
432.3
2365
Male, age 74, right hemisphere
413.4
2697
Female, age 85, both hemispheres
378.9
2327
Male, age 80, both hemispheres
309.0
Motor trigeminal nucleus nTPM: 474.7
2335
Male, age 61, both hemispheres
560.7
2321
Female, age 91, both hemispheres
476.8
2309
Male, age 76, both hemispheres
474.7
2560
Male, age 74, both hemispheres
450.7
2079
Male, age 80, both hemispheres
410.4
Nuclei of the trapezoid body nTPM: 428.2
1983
Male, age 76, both hemispheres
537.2
2166
Male, age 80, both hemispheres
448.2
2368
Female, age 91, both hemispheres
400.1
2159
Male, age 61, both hemispheres
390.2
2735
Female, age 85, both hemispheres
365.1
Nucleus raphe magnus nTPM: 393.5
2459
Female, age 91, both hemispheres
445.0
2051
Male, age 76, both hemispheres
430.1
2455
Male, age 74, both hemispheres
394.8
2328
Male, age 80, both hemispheres
383.6
2160
Male, age 61, both hemispheres
364.7
2172
Female, age 85, both hemispheres
342.7
Paramedian reticular nucleus nTPM: 475.6
2057
Male, age 80, both hemispheres
532.9
2052
Male, age 76, both hemispheres
502.1
2313
Male, age 61, both hemispheres
460.4
2050
Female, age 85, both hemispheres
407.0
Pedunculopontine tegmental nucleus nTPM: 469.8
2338
Male, age 61, both hemispheres
536.8
2334
Male, age 80, both hemispheres
503.4
1921
Female, age 85, both hemispheres
369.2
Pontine nuclei nTPM: 478.4
2319
Female, age 91, both hemispheres
538.7
2115
Male, age 80, left hemisphere
529.6
1968
Male, age 76, left hemisphere
505.8
2109
Female, age 72, unknown
502.0
2454
Male, age 74, left hemisphere
484.6
1863
Male, age 55, unknown
481.5
2727
Male, age 61, right hemisphere
400.4
2787
Female, age 85, both hemispheres
384.8
Pontine raphe nucleus nTPM: 414.2
2122
Female, age 85, midline
425.3
2853
Male, age 76, midline
403.0
Posteroventral cochlear nucleus nTPM: 606.6
2135
Female, age 91, both hemispheres
738.0
2341
Male, age 80, both hemispheres
664.0
2371
Male, age 61, both hemispheres
598.0
2070
Male, age 76, both hemispheres
530.6
2752
Female, age 85, both hemispheres
502.4
Principal sensory trigeminal nucleus nTPM: 416.7
2158
Male, age 61, both hemispheres
464.6
2367
Female, age 91, left hemisphere
434.6
2324
Male, age 76, both hemispheres
391.4
2008
Male, age 80, left hemisphere
376.2
Reticular pontine nucleus, caudal nTPM: 469.1
2559
Male, age 74, both hemispheres
520.5
2092
Male, age 76, both hemispheres
502.5
2457
Female, age 91, both hemispheres
498.4
2332
Male, age 80, right hemisphere
355.1
Reticular pontine nucleus, oral nTPM: 469.0
2361
Male, age 74, both hemispheres
526.4
2366
Female, age 91, both hemispheres
497.7
1939
Male, age 80, both hemispheres
470.6
2167
Male, age 76, both hemispheres
444.3
2012
Female, age 85, both hemispheres
406.0
Reticulotegmental nucleus nTPM: 456.7
2452
Male, age 74, both hemispheres
576.5
2322
Female, age 91, both hemispheres
443.8
2333
Male, age 80, both hemispheres
435.5
2325
Male, age 76, both hemispheres
371.2
Spinal trigeminal nucleus, oral nTPM: 450.0
2164
Male, age 80, both hemispheres
480.1
1978
Male, age 76, both hemispheres
457.5
2737
Female, age 85, both hemispheres
412.5
Subcoeruleus area nTPM: 472.5
2451
Male, age 74, both hemispheres
618.9
2369
Female, age 85, left hemisphere
528.0
2089
Male, age 76, left hemisphere
421.3
1958
Male, age 80, both hemispheres
410.6
2323
Female, age 91, left hemisphere
383.9
Superior olive nTPM: 418.8
2020
Male, age 76, both hemispheres
512.2
2561
Female, age 91, both hemispheres
432.1
2364
Male, age 74, right hemisphere
428.5
2329
Male, age 80, right hemisphere
361.8
1875
Female, age 85, both hemispheres
359.3
Ventral periolivary nuclei nTPM: 417.2
2023
Male, age 76, both hemispheres
512.5
2165
Male, age 80, both hemispheres
424.1
2794
Female, age 91, left hemisphere
422.7
2130
Female, age 85, both hemispheres
309.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 429.0
2161
Male, age 80, both hemispheres
471.8
2456
Female, age 91, both hemispheres
471.4
2359
Male, age 61, both hemispheres
437.2
1959
Male, age 76, both hemispheres
421.6
2449
Male, age 74, both hemispheres
389.6
2840
Female, age 85, both hemispheres
382.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
