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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:976.9 nTPM
HPA Brain:1153.2 nTPM
GTEx:976.9 nTPM
FANTOM5:432.8 Scaled Tags Per Million
Pig:161.1 nTPM
Mouse:60.2 nTPM
Allen mouse:1.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1153.2
Sample id Sample description nTPM
Amygdala
nTPM: 772.8
2695 Female, age 67, right hemisphere 1317.2
2814 Male, age 76, right hemisphere 819.3
2517 Female, age 94, left hemisphere 618.7
2514 Male, age 75, right hemisphere 618.6
1987 Female, age 91, left hemisphere 490.1
Basal amygdala
nTPM: 802.2
2827 Female, age 67, right hemisphere 1910.4
2685 Female, age 94, left hemisphere 721.0
2110 Male, age 80, left hemisphere 669.9
2609 Male, age 75, right hemisphere 655.9
1955 Male, age 76, both hemispheres 482.5
2243 Female, age 91, right hemisphere 373.2
Central amygdala
nTPM: 951.7
2826 Female, age 94, left hemisphere 2210.1
2515 Male, age 75, right hemisphere 862.2
1905 Male, age 76, both hemispheres 648.9
2239 Male, age 80, left hemisphere 558.0
2701 Female, age 91, right hemisphere 479.1
Corticomedial amygdala
nTPM: 529.2
2535 Female, age 67, right hemisphere 960.3
2428 Male, age 75, right hemisphere 626.2
2829 Male, age 80, left hemisphere 518.2
2240 Male, age 76, both hemispheres 424.2
2429 Female, age 94, left hemisphere 340.3
2242 Female, age 91, right hemisphere 305.6
Lateral amygdala
nTPM: 1153.2
2830 Female, age 67, right hemisphere 2804.6
2534 Female, age 94, left hemisphere 1091.3
2516 Male, age 75, right hemisphere 1087.0
2256 Male, age 80, left hemisphere 798.0
1883 Male, age 76, both hemispheres 687.6
2255 Female, age 91, right hemisphere 450.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

976.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 976.9
Samples: 152

Max nTPM: 3343.7
Min nTPM: 15.5
Std nTPM: 674.2
Median nTPM: 723.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 3343.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 3005.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2988.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 2853.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2845.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2650.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2646.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2480.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2310.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2271.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2206.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2112.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2095.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2071.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2030.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2002.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1947.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1929.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1927.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1915.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1852.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1754.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1752.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1746.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1672.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1606.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1582.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1556.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1537.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1534.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1373.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1371.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1369.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1350.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1324.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1289.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1266.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1265.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1210.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1187.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1170.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1167.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1162.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1140.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1090.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1064.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1063.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1060.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1045.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1044.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1032.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1026.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1025.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 982.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 980.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 970.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 968.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 967.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 955.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 954.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 940.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 939.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 935.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 928.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 879.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 861.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 860.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 836.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 833.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 832.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 825.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 817.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 782.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 773.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 743.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 724.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 723.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 704.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 692.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 684.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 679.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 672.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 661.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 645.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 641.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 633.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 626.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 613.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 603.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 602.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 591.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 590.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 585.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 580.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 567.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 566.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 564.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 563.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 557.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 557.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 553.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 549.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 545.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 544.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 542.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 541.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 534.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 533.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 531.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 522.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 513.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 512.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 502.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 501.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 498.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 486.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 471.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 468.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 452.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 447.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 443.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 432.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 430.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 429.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 428.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 425.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 413.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 412.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 396.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 394.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 389.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 387.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 384.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 384.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 383.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 381.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 379.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 371.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 363.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 357.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 356.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 354.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 353.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 350.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 347.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 344.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 336.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 328.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 324.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 322.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 275.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 15.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

432.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 432.8
FF:10151-102I7 76 years, female 432.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.1
Pig sample Sample description nTPM
Amygdala
nTPM: 161.1
Samples: 4

Max nTPM: 215.1
Min nTPM: 115.1
Sample A Female 157.8
Sample B Female 215.1
Sample C Male 156.2
Sample D Male 115.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 60.2
Samples: 4

Max nTPM: 63.2
Min nTPM: 57.2
Sample A Male 57.2
Sample B Male 63.2
Sample C Female 62.1
Sample D Female 58.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.7
71587888 Antisense, RP_050725_03_G01, Mouse strain C57BL/6J (56 days, male) 1.9
68845502 Antisense, RP_050224_01_H07, Mouse strain C57BL/6J (56 days, male) 1.5

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