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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1413.5 nTPM
FANTOM5:692.1 Scaled Tags Per Million
Pig:208.8 nTPM
Allen mouse:1.4 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1413.5
Sample id Sample description nTPM
Area postrema
nTPM: 1207.5
2799 Male, age 61, both hemispheres 2004.2
2306 Male, age 80, both hemispheres 1059.2
2054 Male, age 76, both hemispheres 559.2
Dorsal medullary reticular nucleus
nTPM: 1110.8
2373 Male, age 61, both hemispheres 1251.2
2088 Male, age 76, both hemispheres 1116.8
2040 Female, age 85, both hemispheres 964.5
Dorsal motor vagal complex
nTPM: 1172.4
2797 Male, age 61, both hemispheres 3048.1
2807 Female, age 85, both hemispheres 1293.1
2643 Male, age 74, both hemispheres 1188.8
2185 Male, age 76, both hemispheres 1032.9
2133 Female, age 91, both hemispheres 820.5
2844 Male, age 55, unknown 764.2
2000 Male, age 74, unknown 721.2
2813 Female, age 72, unknown 510.4
Gigantocellular reticular nuclei, medullary
nTPM: 1019.7
2387 Female, age 91, both hemispheres 1587.8
2314 Male, age 61, both hemispheres 1215.2
2310 Male, age 80, both hemispheres 1045.7
1876 Female, age 85, both hemispheres 923.1
2022 Male, age 76, right hemisphere 723.4
2462 Male, age 74, both hemispheres 623.2
Gigantocellular reticular nuclei, pars
nTPM: 1069.0
2706 Male, age 80, both hemispheres 1276.6
2330 Male, age 80, both hemispheres 1247.1
2336 Male, age 61, both hemispheres 1016.6
2084 Female, age 85, both hemispheres 997.6
2168 Male, age 76, both hemispheres 807.1
Inferior olive
nTPM: 1067.2
2379 Male, age 80, both hemispheres 1406.0
2628 Female, age 91, both hemispheres 1177.9
2085 Female, age 85, both hemispheres 1058.6
2178 Male, age 61, both hemispheres 929.9
2563 Male, age 74, both hemispheres 763.8
Lateral medullary reticular nucleus
nTPM: 992.9
2852 Male, age 80, both hemispheres 1127.3
2804 Female, age 91, both hemispheres 1108.9
2190 Female, age 85, both hemispheres 1060.9
2374 Male, age 61, both hemispheres 977.7
2044 Male, age 76, both hemispheres 907.7
2305 Male, age 74, both hemispheres 774.7
Medial olivary nucleus
nTPM: 1143.4
1962 Male, age 76, both hemispheres 1453.0
2138 Female, age 91, both hemispheres 1143.2
1943 Male, age 61, both hemispheres 1060.4
2851 Male, age 80, both hemispheres 917.1
Medial vestibular nucleus
nTPM: 846.2
2803 Female, age 91, both hemispheres 1270.1
2093 Male, age 80, both hemispheres 1107.5
2624 Male, age 61, both hemispheres 892.5
2801 Male, age 74, both hemispheres 715.4
2743 Female, age 85, both hemispheres 627.5
2134 Male, age 76, both hemispheres 464.2
Motor hypoglossal nucleus
nTPM: 948.3
2132 Female, age 85, both hemispheres 1316.7
2182 Male, age 80, both hemispheres 1135.8
2125 Female, age 91, both hemispheres 1105.8
2461 Male, age 61, both hemispheres 738.1
2277 Male, age 76, both hemispheres 445.2
Nucleus ambiguus
nTPM: 1079.7
2071 Male, age 76, both hemispheres 1332.6
2096 Female, age 85, both hemispheres 826.8
Nucleus cuneatus
nTPM: 1413.5
2805 Female, age 91, both hemispheres 2137.1
2380 Male, age 80, both hemispheres 1681.8
2808 Female, age 85, both hemispheres 1487.9
2381 Male, age 80, both hemispheres 1450.4
2376 Male, age 61, both hemispheres 1343.0
2562 Male, age 61, both hemispheres 1301.5
2564 Male, age 74, both hemispheres 1274.4
2100 Male, age 76, both hemispheres 1197.5
2131 Male, age 76, both hemispheres 847.9
Nucleus gracilis
nTPM: 1366.9
2382 Male, age 80, both hemispheres 1619.4
2299 Female, age 85, both hemispheres 1440.6
2627 Male, age 74, both hemispheres 1040.8
Nucleus raphe obscurus
nTPM: 1264.0
2142 Male, age 76, midline 1368.4
2845 Female, age 85, midline 1281.8
2800 Male, age 61, midline 1141.7
Nucleus raphe pallidus
nTPM: 1062.3
2145 Male, age 76, midline 1615.0
2183 Male, age 80, midline 822.4
1924 Male, age 61, midline 749.4
Nucleus tractus solitarii
nTPM: 611.2
2191 Female, age 85, both hemispheres 701.6
2307 Male, age 80, both hemispheres 626.9
2144 Female, age 91, right hemisphere 610.2
2656 Male, age 76, both hemispheres 505.9
Parvicellular reticular nuclei
nTPM: 1034.8
2095 Male, age 76, both hemispheres 1185.9
2558 Male, age 74, both hemispheres 992.7
2119 Male, age 80, both hemispheres 925.8
Parvicellular reticular nuclei, medullary
nTPM: 889.7
2181 Male, age 80, left hemisphere 946.3
2189 Female, age 91, both hemispheres 921.9
2091 Female, age 85, both hemispheres 801.0
Peritrigeminal nucleus
nTPM: 882.6
2136 Male, age 76, both hemispheres 1035.7
2067 Female, age 85, both hemispheres 824.5
2179 Male, age 61, both hemispheres 787.6
Prepositus hypoglossal nucleus
nTPM: 791.9
2855 Female, age 85, right hemisphere 978.9
2086 Male, age 80, both hemispheres 604.9
Spinal trigeminal nucleus, caudal
nTPM: 1013.7
2308 Male, age 80, both hemispheres 1252.9
2312 Male, age 61, both hemispheres 995.9
2642 Male, age 74, both hemispheres 953.9
2390 Female, age 91, both hemispheres 933.0
2447 Male, age 76, both hemispheres 932.8
Spinal trigeminal nucleus, interpolar
nTPM: 914.6
2389 Female, age 91, both hemispheres 1102.9
2033 Male, age 80, both hemispheres 1071.7
2386 Female, age 85, both hemispheres 931.6
2625 Male, age 61, both hemispheres 797.6
2066 Male, age 76, right hemisphere 669.4
Spinal vestibular nucleus
nTPM: 1246.5
2384 Male, age 74, both hemispheres 1784.3
2806 Female, age 85, both hemispheres 1245.0
2796 Male, age 61, both hemispheres 1210.9
2186 Female, age 91, both hemispheres 1085.0
2748 Male, age 76, both hemispheres 1084.5
2780 Male, age 80, both hemispheres 1069.2
Superior vestibular nucleus
nTPM: 753.5
2015 Male, age 80, both hemispheres 934.9
2383 Male, age 74, both hemispheres 674.3
2061 Male, age 76, both hemispheres 651.4
Ventral medullary reticular nucleus
nTPM: 1104.1
2372 Male, age 61, both hemispheres 1215.1
2060 Male, age 76, both hemispheres 993.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1015.3
2118 Male, age 80, both hemispheres 1275.7
2302 Female, age 91, both hemispheres 1199.0
1986 Male, age 76, both hemispheres 913.3
2741 Female, age 85, both hemispheres 857.1
2180 Male, age 61, both hemispheres 831.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

692.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 692.1
FF:10038-101F2 18-64 years, mixed 952.6
FF:10155-103A2 76 years, female 573.4
FF:10174-103C3 60 years, female 550.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

208.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 208.8
Samples: 4

Max nTPM: 236.8
Min nTPM: 193.8
Sample A Female 193.8
Sample B Female 202.7
Sample C Male 236.8
Sample D Male 201.7

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.4
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 1.4
71587888 Antisense, RP_050725_03_G01, Mouse strain C57BL/6J (56 days, male) 1.8
68845502 Antisense, RP_050224_01_H07, Mouse strain C57BL/6J (56 days, male) 1.1

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