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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1852.7 nTPM
HPA Brain:1432.5 nTPM
GTEx:1852.7 nTPM
FANTOM5:765.2 Scaled Tags Per Million
Pig:245.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1432.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 900.4
2565 Male, age 75, midline 1186.9
2816 Male, age 47, midline 858.7
2048 Male, age 55, midline 855.8
2194 Female, age 79, both hemispheres 831.2
1981 Female, age 72, midline 769.6
Cervical spinal cord, dorsal horn
nTPM: 718.8
2173 Female, age 72, unknown 988.6
2296 Male, age 66, both hemispheres 836.5
2069 Male, age 47, both hemispheres 725.7
1877 Male, age 55, unknown 669.9
2297 Male, age 75, both hemispheres 623.0
2721 Male, age 90, both hemispheres 468.9
Cervical spinal cord, ventral horn
nTPM: 1432.5
2480 Male, age 75, both hemispheres 2676.2
2809 Male, age 90, both hemispheres 1781.2
2295 Male, age 66, both hemispheres 1413.1
2820 Female, age 79, both hemispheres 1065.8
2068 Male, age 55, unknown 931.3
2098 Female, age 72, unknown 727.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1852.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1852.7
Samples: 159

Max nTPM: 7249.3
Min nTPM: 398.4
Std nTPM: 1040.0
Median nTPM: 1575.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 7249.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 5096.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 4852.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 4745.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 4706.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 4427.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 4320.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 3793.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 3624.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 3618.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3609.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 3447.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3396.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 3356.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 3331.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 3239.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 3207.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 3135.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 3072.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 3038.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2996.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2948.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2941.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2922.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2862.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2854.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2851.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2788.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2780.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2752.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2751.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2662.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 2492.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2473.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2473.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 2404.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2396.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 2377.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2290.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 2239.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2216.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2197.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2168.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 2061.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2057.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2051.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 2024.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2006.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1998.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1944.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1922.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1888.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1887.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1882.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1877.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1859.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1856.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1854.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1844.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1787.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1775.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1753.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1750.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1748.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1725.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1723.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1718.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1701.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1697.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1675.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1662.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1659.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1637.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1631.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1627.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1615.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1610.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1609.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1582.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1575.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1574.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1569.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1563.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1537.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1534.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1533.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1476.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1469.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1465.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1453.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1452.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1415.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1409.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1395.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1395.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1392.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1385.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1384.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1376.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1366.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1354.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1352.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1346.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1341.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1329.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1285.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1282.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1273.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1273.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1267.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1253.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1243.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1233.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1212.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1208.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1208.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1174.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1163.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1161.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1158.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1143.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1141.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1139.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1113.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1112.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1107.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1090.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1083.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1081.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1078.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1069.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1050.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1040.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1035.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1032.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1007.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1004.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 943.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 933.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 897.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 879.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 878.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 869.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 867.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 857.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 853.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 850.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 808.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 803.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 758.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 737.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 723.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 681.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 678.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 657.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 560.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 522.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 411.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 398.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

765.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 765.2
FF:10159-103A6 76 years, female 774.4
FF:10181-103D1 60 years, female 756.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

245.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 221.2
Samples: 4

Max nTPM: 239.8
Min nTPM: 198.3
Sample A Female 219.9
Sample B Female 239.8
Sample C Male 198.3
Sample D Male 226.8
Ventral spinal cord
nTPM: 245.9
Samples: 4

Max nTPM: 294.6
Min nTPM: 202.8
Sample A Female 231.7
Sample B Female 254.6
Sample C Male 202.8
Sample D Male 294.6

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