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BRAIN BASAL GANGLIA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:111214.1 nTPM
HPA Brain:44965.2 nTPM
GTEx:111214.1 nTPM
Pig:89925.3 nTPM
Mouse:66980.5 nTPM
Allen mouse:21.9 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042788
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44965.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 28049.4
2290 Female, age 72, unknown 45515.9
2846 Female, age 79, unknown 38521.5
2289 Male, age 61, right hemisphere 28019.1
1857 Female, age 85, left hemisphere 27073.7
2481 Female, age 94, left hemisphere 24209.4
1781 Male, age 74, unknown 20634.6
1854 Male, age 80, left hemisphere 20277.8
2288 Male, age 75, left hemisphere 20142.9
Globus pallidus, externus
nTPM: 31366.5
2646 Male, age 61, right hemisphere 68196.9
2567 Female, age 72, unknown 43828.5
1996 Male, age 80, right hemisphere 19782.7
2772 Female, age 79, unknown 13847.0
2395 Male, age 75, both hemispheres 11177.4
Globus pallidus, internus
nTPM: 21375.9
2566 Female, age 72, unknown 32901.0
2483 Female, age 94, right hemisphere 29217.4
1818 Male, age 74, unknown 25969.5
2037 Male, age 80, right hemisphere 18313.5
2287 Male, age 75, right hemisphere 16151.8
2111 Female, age 85, right hemisphere 15769.8
2778 Female, age 91, both hemispheres 11308.3
Nucleus accumbens
nTPM: 23572.2
2698 Female, age 72, unknown 48751.3
2824 Male, age 61, right hemisphere 27444.8
1783 Male, age 74, unknown 23045.2
1856 Female, age 91, right hemisphere 21633.9
1806 Female, age 85, left hemisphere 20750.8
2391 Female, age 94, left hemisphere 16511.2
2286 Male, age 75, left hemisphere 15960.9
2732 Male, age 80, right hemisphere 14479.8
Nucleus basalis of Meynert
nTPM: 44965.2
2569 Male, age 61, both hemispheres 90784.7
2484 Female, age 94, left hemisphere 32955.8
2821 Male, age 75, both hemispheres 32079.6
2393 Male, age 80, right hemisphere 24040.8
Nucleus of the diagonal band
nTPM: 22590.0
2195 Female, age 85, both hemispheres 32779.6
1979 Male, age 74, unknown 22501.0
2029 Male, age 61, right hemisphere 22104.5
2775 Male, age 80, right hemisphere 20569.5
1812 Female, age 91, both hemispheres 14995.3
Putamen
nTPM: 35277.6
2489 Female, age 72, unknown 67031.3
2647 Male, age 75, left hemisphere 52153.8
1829 Male, age 74, unknown 34719.4
2482 Female, age 94, left hemisphere 34471.2
1838 Male, age 80, right hemisphere 23483.5
2466 Female, age 79, unknown 18074.5
1937 Female, age 91, right hemisphere 17009.5
Septal nuclei
nTPM: 21994.8
2394 Male, age 61, left hemisphere 34902.0
1960 Male, age 74, unknown 24058.7
2199 Male, age 80, right hemisphere 22498.8
2629 Female, age 94, right hemisphere 21945.0
2059 Female, age 85, both hemispheres 21916.8
2031 Female, age 72, unknown 16136.2
2009 Female, age 91, both hemispheres 12506.0
Stria terminalis, bed nucleus
nTPM: 20073.4
2201 Male, age 74, unknown 29150.2
2486 Female, age 94, both hemispheres 16679.8
1974 Female, age 91, both hemispheres 14390.3

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111214.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 87499.3
Samples: 246

Max nTPM: 497197.4
Min nTPM: 16019.4
Std nTPM: 70852.5
Median nTPM: 63900.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 497197.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 496341.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 344190.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 326187.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 315326.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 302819.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 295972.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 289295.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 285423.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 283573.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 262857.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 248052.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 233358.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 208757.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 207617.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 194705.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 191266.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 190952.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 184841.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 184319.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 179510.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 172123.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 171483.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 170816.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 159709.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 157972.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 157758.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 157685.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 157202.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 152543.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 150172.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 149330.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 148056.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 145835.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 145783.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 144958.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 141790.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 139274.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 134110.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 133302.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 133194.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 131841.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 129252.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 129099.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 127449.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 123940.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 121638.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 119960.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 118637.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 116376.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 113413.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 113056.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 108209.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 106932.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 106844.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 106586.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 104929.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 103587.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 101884.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 101207.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 100699.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 100681.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 100458.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 99322.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 99293.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 98798.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 98669.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 97334.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 96570.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 93595.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 93484.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 93339.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 90967.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 90619.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 89772.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 89303.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 87979.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 86542.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 85536.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 85528.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 85527.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 83968.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 83110.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 82515.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 81864.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 81832.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 81522.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 81270.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 81075.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 80869.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 80718.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 80511.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 80048.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 79913.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 79333.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 79304.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 79176.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 78810.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 77628.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 77065.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 76662.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 76221.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 76192.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 75688.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 75574.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 72889.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 72778.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 72077.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 71664.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 71194.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 70702.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 69604.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 68652.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 68583.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 67428.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 66194.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 65928.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 65778.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 65540.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 65533.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 64538.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 64506.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 64069.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 63732.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 63413.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 63217.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 63202.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 62269.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 62256.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 62088.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 61576.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 61377.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 60774.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 59608.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 59170.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 58897.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 57991.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 57825.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 56965.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 56787.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 56133.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 55971.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 55855.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 55712.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 55347.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 55151.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 55099.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 55085.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 54930.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 54850.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 54400.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 54222.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 54158.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 54107.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 54089.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 54003.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 53955.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 53897.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 53378.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 52366.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 51151.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 50691.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 50364.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 50362.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 50222.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 49782.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 49628.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 48526.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 48484.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 48421.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 48072.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 47869.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 47158.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 46776.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 46481.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 45725.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 45330.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 45326.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 45288.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 45149.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 45120.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 45017.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 44461.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 44459.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 44237.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 44078.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 43970.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 43957.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 43277.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 43247.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 42882.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 42868.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 42840.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 42619.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 42249.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 42104.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 42002.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 41964.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 41795.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 41387.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 41329.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 40976.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 40286.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 40197.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 39167.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 38906.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 38822.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 38790.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 38491.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 38335.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 38159.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 37997.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 37845.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 37554.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 37095.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 36894.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 36668.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 36614.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 36307.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 36266.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 36218.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 35400.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 34793.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 34279.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 34187.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 33873.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 33679.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 33543.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 33402.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 33381.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 33304.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 32998.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 32015.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 31458.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 30177.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 29505.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 29024.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 28862.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 26801.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 26715.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 25721.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 25584.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 22275.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 21351.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 21225.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 16019.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 101911.7
Samples: 246

Max nTPM: 647801.4
Min nTPM: 1784.5
Std nTPM: 99275.2
Median nTPM: 66207.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 647801.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 645353.3
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 595012.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 454469.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 383793.8
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 375709.0
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 370504.5
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 370478.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 346045.5
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 341701.5
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 338643.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 324485.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 322077.3
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 311469.0
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 305108.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 289176.6
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 286187.3
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 281971.4
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 256559.1
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 254437.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 245060.4
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 230419.0
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 229770.0
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 227161.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 223898.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 216200.2
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 215018.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 213121.9
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 211156.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 207484.6
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 198516.2
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 194662.2
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 184873.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 171027.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 169393.7
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 169362.4
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 166035.0
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 164541.9
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 155749.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 154760.2
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 154128.3
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 153488.1
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 152980.4
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 147036.1
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 140016.2
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 139052.5
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 138431.1
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 137580.7
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 136567.2
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 135324.6
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 134651.7
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 133176.0
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 132016.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 131663.0
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 129005.6
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 126884.6
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 124661.4
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 119649.9
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 119260.6
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 112928.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 112576.2
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 110957.4
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 109987.8
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 108452.4
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 108253.9
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 107403.5
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 104361.3
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 101065.1
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 101014.9
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 98349.3
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 97330.8
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 97197.5
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 96673.2
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 95488.3
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 94358.8
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 94051.2
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 93932.1
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 93553.1
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 92227.6
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 92124.3
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 90699.2
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 89359.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 89098.2
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 88279.8
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 86438.2
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 86381.2
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 86185.7
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 85284.3
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 84601.2
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 83195.0
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 82618.1
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 82606.9
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 81789.0
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 81732.0
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 80980.8
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 80649.5
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 80278.8
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 80189.0
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 79334.0
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 77826.5
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 76573.0
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 75844.6
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 75776.7
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 75670.3
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 75574.5
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 74713.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 73419.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 73286.5
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 73020.8
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 72051.8
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 72014.7
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 71456.6
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 70795.3
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 70731.6
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 70678.9
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 70030.1
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 69982.1
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 69606.9
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 69582.6
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 68986.7
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 67471.1
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 67162.1
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 66256.4
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 66157.7
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 65526.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 65374.7
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 63217.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 62485.9
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 62473.9
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 62349.2
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 61602.5
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 61544.2
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 61172.4
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 61108.2
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 60385.2
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 59680.8
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 57865.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 57831.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 57720.7
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 57330.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 57283.1
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 57198.5
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 56448.3
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 56055.5
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 55912.4
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 55744.8
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 55424.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 54822.0
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 54617.1
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 54451.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 54429.9
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 53951.5
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 53848.1
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 53738.9
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 53672.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 53562.8
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 53346.1
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 53116.4
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 53044.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 52927.7
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 52739.4
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 52467.0
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 52358.6
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 51868.5
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 51613.0
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 51579.9
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 51526.8
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 51380.1
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 51275.6
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 51109.5
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 51043.0
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 50972.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 50357.3
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 50293.7
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 50159.2
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 50100.9
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 49892.6
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 48879.1
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 48291.6
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 47763.8
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 47560.4
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 47524.2
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 46896.7
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 46864.8
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 46733.9
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 46074.2
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 46027.8
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 45820.2
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 45303.7
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 45272.3
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 45261.3
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 44172.0
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 44039.5
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 43986.7
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 43846.6
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 43496.7
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 43370.2
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 43021.4
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 42973.8
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 42349.1
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 42340.6
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 41985.0
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 41718.0
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 41671.9
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 41251.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 40926.4
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 40691.6
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 40462.3
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 40458.8
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 39865.4
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 39860.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 39638.1
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 39222.8
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 38289.4
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 38253.5
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 38140.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 38067.3
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 36789.5
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 35776.6
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 35677.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 35224.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 35077.1
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 34915.3
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 34261.0
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 34237.9
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 34062.4
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 33313.7
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 32988.1
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 32865.2
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 32314.5
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 32310.5
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 31375.0
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 31238.2
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 31068.9
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 30799.1
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 30696.8
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 29466.0
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 28546.1
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 25741.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 25427.3
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 25158.4
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 24767.0
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 21111.7
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 18434.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 13052.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 1784.5
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Brain - Putamen (basal ganglia)
Average nTPM: 111214.1
Samples: 205

Max nTPM: 512100.1
Min nTPM: 21036.6
Std nTPM: 81801.9
Median nTPM: 86125.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 512100.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 445837.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 435024.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 399132.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 389396.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 355796.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 351682.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 304735.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 298862.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 279408.6
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 271273.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 263547.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 255279.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 241501.3
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 237070.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 230587.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 229163.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 225485.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 222526.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 220874.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 210359.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 209924.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 205147.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 205003.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 201470.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 193504.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 191457.4
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 189714.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 185496.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 181885.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 178830.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 173893.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 172070.1
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 171182.7
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 168034.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 161163.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 160102.3
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 153398.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 152073.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 152002.0
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 151665.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 150471.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 148387.5
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 146341.9
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 141442.0
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 141059.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 140382.9
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 139517.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 138805.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 138020.9
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 133825.2
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 133458.0
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 132093.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 131107.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 128561.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 127853.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 120969.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 120492.9
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 120376.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 120302.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 119805.8
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 119552.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 118896.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 118874.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 118678.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 118062.3
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 117460.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 113844.9
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 110889.9
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 110695.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 110566.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 109936.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 108921.3
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 108615.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 108456.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 105845.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 105807.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 105118.1
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 104207.2
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 104025.7
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 103853.4
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 102559.5
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 102237.3
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 101235.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 101178.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 100550.8
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 100177.8
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 98587.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 97901.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 97701.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 96320.3
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 95816.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 95630.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 95323.0
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 95020.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 91783.8
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 91664.2
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 88856.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 88169.0
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 87617.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 87364.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 86834.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 86125.9
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 85690.8
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 85355.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 85254.4
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 83918.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 82910.4
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 81545.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 81200.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 80760.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 80725.7
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 80398.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 79996.3
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 79697.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 79599.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 78320.7
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 77912.9
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 77912.6
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 77585.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 76433.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 76429.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 76412.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 75802.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 75452.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 75432.3
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 72605.9
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 72516.9
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 72319.9
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 72017.1
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 72003.8
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 71444.4
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 70515.0
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 70296.7
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 70244.4
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 68730.3
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 68549.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 67744.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 67107.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 66187.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 65028.4
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 64902.2
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 64801.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 64379.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 63741.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 63699.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 63530.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 61786.0
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 61730.6
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 60917.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 60841.2
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 60720.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 60409.2
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 59568.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 58577.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 56542.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 56510.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 56340.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 55042.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 54729.4
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 53921.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 52447.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 51903.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 51317.8
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 50123.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 49643.1
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 49255.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 49043.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 48882.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 48851.4
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 48851.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 47357.3
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 47238.3
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 45685.4
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 45262.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 45079.6
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 43982.4
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 43868.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 43181.9
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 42673.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 42457.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 42002.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 41265.8
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 40634.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 40568.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 40466.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 40092.0
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 39936.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 39912.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 39663.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 38830.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 38043.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 37867.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 36133.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 34868.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 34770.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 34690.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 34044.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 33467.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 32079.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 30327.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 28849.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 23918.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 21649.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 21036.6
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BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89925.3
Pig sample Sample description nTPM
Caudate
nTPM: 65696.2
Samples: 4

Max nTPM: 77628.0
Min nTPM: 55548.2
Sample A Female 55548.2
Sample B Female 67677.0
Sample C Male 77628.0
Sample D Male 61931.5
Putamen
nTPM: 89925.3
Samples: 4

Max nTPM: 122485.8
Min nTPM: 48668.5
Sample A Female 48668.5
Sample B Female 98288.0
Sample C Male 122485.8
Sample D Male 90258.8
Septum
nTPM: 44461.4
Samples: 4

Max nTPM: 55299.0
Min nTPM: 32304.5
Sample A Female 54750.9
Sample B Female 55299.0
Sample C Male 32304.5
Sample D Male 35491.1
Ventral pallidum
nTPM: 61804.8
Samples: 4

Max nTPM: 74168.3
Min nTPM: 49018.7
Sample A Female 74168.3
Sample B Female 67065.3
Sample C Male 49018.7
Sample D Male 56966.7

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66980.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 66980.5
Samples: 4

Max nTPM: 78712.9
Min nTPM: 61404.9
Sample A Male 63498.2
Sample B Male 64305.9
Sample C Female 61404.9
Sample D Female 78712.9
Septum
nTPM: 47121.0
Samples: 4

Max nTPM: 62421.1
Min nTPM: 33160.4
Sample A Male 33160.4
Sample B Male 62421.1
Sample C Female 53126.9
Sample D Female 39775.5
Ventral forebrain
nTPM: 52891.0
Samples: 4

Max nTPM: 77027.6
Min nTPM: 43022.9
Sample A Male 43819.6
Sample B Male 47693.7
Sample C Female 77027.6
Sample D Female 43022.9

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 21.9
81600592 Antisense, RP_090205_01_D01, Mouse strain C57BL/6J (56 days, male) 22.6
74357761 Antisense, RP_051219_04_A05, Mouse strain C57BL/6J (56 days, male) 21.3
Pallidum
Expression energy: 21.4
81600592 Antisense, RP_090205_01_D01, Mouse strain C57BL/6J (56 days, male) 21.9
74357761 Antisense, RP_051219_04_A05, Mouse strain C57BL/6J (56 days, male) 21.0

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