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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:63838.6 nTPM
Pig:46746.5 nTPM
Allen mouse:20.5 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63838.6
Sample id Sample description nTPM
Area postrema
nTPM: 54381.7
2799 Male, age 61, both hemispheres 68956.2
2306 Male, age 80, both hemispheres 53040.4
2054 Male, age 76, both hemispheres 41148.7
Dorsal medullary reticular nucleus
nTPM: 37408.4
2088 Male, age 76, both hemispheres 42383.6
2373 Male, age 61, both hemispheres 40476.4
2040 Female, age 85, both hemispheres 29365.2
Dorsal motor vagal complex
nTPM: 56200.0
2797 Male, age 61, both hemispheres 122845.9
2807 Female, age 85, both hemispheres 75674.6
2643 Male, age 74, both hemispheres 59784.4
2185 Male, age 76, both hemispheres 50839.9
2813 Female, age 72, unknown 42028.2
2844 Male, age 55, unknown 36176.8
2133 Female, age 91, both hemispheres 34857.5
2000 Male, age 74, unknown 27393.1
Gigantocellular reticular nuclei, medullary
nTPM: 39808.9
2387 Female, age 91, both hemispheres 62452.0
2310 Male, age 80, both hemispheres 59949.9
2314 Male, age 61, both hemispheres 39837.8
2462 Male, age 74, both hemispheres 32150.5
2022 Male, age 76, right hemisphere 24760.3
1876 Female, age 85, both hemispheres 19703.1
Gigantocellular reticular nuclei, pars
nTPM: 52359.2
2330 Male, age 80, both hemispheres 79577.0
2706 Male, age 80, both hemispheres 78079.5
2084 Female, age 85, both hemispheres 38247.2
2336 Male, age 61, both hemispheres 35918.9
2168 Male, age 76, both hemispheres 29973.3
Inferior olive
nTPM: 42546.4
2628 Female, age 91, both hemispheres 83636.5
2379 Male, age 80, both hemispheres 44866.0
2085 Female, age 85, both hemispheres 32854.9
2178 Male, age 61, both hemispheres 32287.3
2563 Male, age 74, both hemispheres 19087.4
Lateral medullary reticular nucleus
nTPM: 32694.5
2804 Female, age 91, both hemispheres 57380.5
2374 Male, age 61, both hemispheres 47246.2
2044 Male, age 76, both hemispheres 32764.9
2190 Female, age 85, both hemispheres 31887.2
2852 Male, age 80, both hemispheres 16369.2
2305 Male, age 74, both hemispheres 10519.2
Medial olivary nucleus
nTPM: 22153.8
2851 Male, age 80, both hemispheres 46989.1
2138 Female, age 91, both hemispheres 19224.7
1962 Male, age 76, both hemispheres 12002.2
1943 Male, age 61, both hemispheres 10399.3
Medial vestibular nucleus
nTPM: 41273.5
2624 Male, age 61, both hemispheres 66677.0
2134 Male, age 76, both hemispheres 46848.2
2803 Female, age 91, both hemispheres 43806.7
2801 Male, age 74, both hemispheres 33968.3
2093 Male, age 80, both hemispheres 33371.0
2743 Female, age 85, both hemispheres 22970.0
Motor hypoglossal nucleus
nTPM: 40556.6
2461 Male, age 61, both hemispheres 63131.6
2132 Female, age 85, both hemispheres 50104.2
2182 Male, age 80, both hemispheres 36227.5
2125 Female, age 91, both hemispheres 30887.3
2277 Male, age 76, both hemispheres 22432.5
Nucleus ambiguus
nTPM: 15403.3
2071 Male, age 76, both hemispheres 18115.7
2096 Female, age 85, both hemispheres 12690.9
Nucleus cuneatus
nTPM: 63838.6
2805 Female, age 91, both hemispheres 136147.8
2808 Female, age 85, both hemispheres 69614.8
2381 Male, age 80, both hemispheres 65519.0
2131 Male, age 76, both hemispheres 62420.9
2100 Male, age 76, both hemispheres 57749.3
2562 Male, age 61, both hemispheres 57460.0
2380 Male, age 80, both hemispheres 51235.5
2564 Male, age 74, both hemispheres 42150.7
2376 Male, age 61, both hemispheres 32249.8
Nucleus gracilis
nTPM: 56004.1
2299 Female, age 85, both hemispheres 75076.6
2382 Male, age 80, both hemispheres 59799.6
2627 Male, age 74, both hemispheres 33136.1
Nucleus raphe obscurus
nTPM: 23645.6
2845 Female, age 85, midline 30615.8
2800 Male, age 61, midline 30002.8
2142 Male, age 76, midline 10318.2
Nucleus raphe pallidus
nTPM: 20474.6
2183 Male, age 80, midline 30003.9
2145 Male, age 76, midline 21144.7
1924 Male, age 61, midline 10275.1
Nucleus tractus solitarii
nTPM: 41058.3
2191 Female, age 85, both hemispheres 54268.3
2307 Male, age 80, both hemispheres 48023.1
2656 Male, age 76, both hemispheres 32885.5
2144 Female, age 91, right hemisphere 29056.3
Parvicellular reticular nuclei
nTPM: 31121.9
2558 Male, age 74, both hemispheres 40395.1
2095 Male, age 76, both hemispheres 30310.9
2119 Male, age 80, both hemispheres 22659.6
Parvicellular reticular nuclei, medullary
nTPM: 36584.3
2181 Male, age 80, left hemisphere 44137.7
2091 Female, age 85, both hemispheres 34442.3
2189 Female, age 91, both hemispheres 31172.9
Peritrigeminal nucleus
nTPM: 26013.6
2136 Male, age 76, both hemispheres 35569.1
2179 Male, age 61, both hemispheres 22346.9
2067 Female, age 85, both hemispheres 20124.8
Prepositus hypoglossal nucleus
nTPM: 41157.1
2855 Female, age 85, right hemisphere 47103.5
2086 Male, age 80, both hemispheres 35210.8
Spinal trigeminal nucleus, caudal
nTPM: 44896.1
2390 Female, age 91, both hemispheres 59582.5
2308 Male, age 80, both hemispheres 52156.1
2447 Male, age 76, both hemispheres 45427.8
2642 Male, age 74, both hemispheres 37101.6
2312 Male, age 61, both hemispheres 30212.6
Spinal trigeminal nucleus, interpolar
nTPM: 38755.1
2389 Female, age 91, both hemispheres 54131.0
2625 Male, age 61, both hemispheres 53033.0
2066 Male, age 76, right hemisphere 33013.8
2033 Male, age 80, both hemispheres 26995.5
2386 Female, age 85, both hemispheres 26602.1
Spinal vestibular nucleus
nTPM: 37072.9
2796 Male, age 61, both hemispheres 53707.3
2806 Female, age 85, both hemispheres 49048.8
2186 Female, age 91, both hemispheres 33065.6
2384 Male, age 74, both hemispheres 30942.6
2748 Male, age 76, both hemispheres 28771.3
2780 Male, age 80, both hemispheres 26901.9
Superior vestibular nucleus
nTPM: 22126.8
2061 Male, age 76, both hemispheres 24650.8
2015 Male, age 80, both hemispheres 23106.2
2383 Male, age 74, both hemispheres 18623.4
Ventral medullary reticular nucleus
nTPM: 32655.6
2372 Male, age 61, both hemispheres 38217.7
2060 Male, age 76, both hemispheres 27093.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 33211.2
2302 Female, age 91, both hemispheres 49254.1
2118 Male, age 80, both hemispheres 32076.0
2180 Male, age 61, both hemispheres 30227.1
1986 Male, age 76, both hemispheres 28374.8
2741 Female, age 85, both hemispheres 26123.8

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46746.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 46746.5
Samples: 4

Max nTPM: 51607.9
Min nTPM: 39932.9
Sample A Female 45530.3
Sample B Female 51607.9
Sample C Male 49915.0
Sample D Male 39932.9

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.5
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 20.5
74357761 Antisense, RP_051219_04_A05, Mouse strain C57BL/6J (56 days, male) 22.1
81600592 Antisense, RP_090205_01_D01, Mouse strain C57BL/6J (56 days, male) 19.0

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