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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:60574.8 nTPM
Pig:51271.7 nTPM
Mouse:37834.7 nTPM
Allen mouse:20.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60574.8
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 43215.9
2497 Male, age 66, unknown 49744.5
2396 Male, age 61, right hemisphere 44926.4
2032 Female, age 42, unknown 34976.7
Centromedial thalamic nucleus
nTPM: 36191.3
2401 Male, age 76, right hemisphere 42961.9
2279 Female, age 85, left hemisphere 29420.6
Habenula
nTPM: 30783.8
2276 Male, age 66, unknown 41752.0
1957 Male, age 80, both hemispheres 35067.1
2252 Male, age 62, unknown 26177.4
2203 Male, age 61, left hemisphere 20138.5
Lateral geniculate body
nTPM: 47037.3
2857 Male, age 74, right hemisphere 88322.7
2659 Male, age 66, unknown 74677.3
2575 Female, age 94, right hemisphere 51747.3
2399 Male, age 61, left hemisphere 40243.9
2035 Female, age 72, unknown 38146.3
1953 Male, age 62, unknown 36987.1
2841 Male, age 80, both hemispheres 25671.3
2106 Female, age 67, right hemisphere 20502.0
Lateral thalamic nuclei
nTPM: 46499.2
2661 Female, age 72, unknown 92928.6
1903 Male, age 76, left hemisphere 53158.7
2573 Female, age 94, left hemisphere 43411.0
2577 Male, age 74, both hemispheres 31939.4
2765 Female, age 67, both hemispheres 11058.1
Medial dorsal thalamic nucleus
nTPM: 47274.9
2572 Female, age 94, right hemisphere 101677.1
2660 Female, age 72, unknown 65557.4
2492 Male, age 75, right hemisphere 56769.6
2576 Male, age 74, both hemispheres 52114.7
2498 Male, age 66, unknown 50837.7
1859 Male, age 76, both hemispheres 48905.5
2283 Male, age 80, right hemisphere 42167.6
2026 Male, age 62, unknown 39235.5
2402 Female, age 67, both hemispheres 39047.9
1810 Male, age 48, unknown 38180.2
1930 Female, age 42, unknown 32572.5
2039 Female, age 72, unknown 27210.4
1971 Male, age 61, right hemisphere 20297.0
Medial geniculate body
nTPM: 54522.7
2650 Female, age 94, left hemisphere 65389.3
2571 Male, age 75, right hemisphere 63444.2
2657 Male, age 74, right hemisphere 62400.4
2207 Male, age 80, right hemisphere 57839.3
2217 Female, age 72, unknown 52779.9
1811 Female, age 42, unknown 47971.4
2049 Male, age 76, both hemispheres 31834.5
Nucleus reuniens
nTPM: 29180.5
2210 Female, age 85, left hemisphere 35698.4
2205 Male, age 80, left hemisphere 34972.4
2212 Female, age 67, left hemisphere 16870.8
Nucleus rhomboideus
nTPM: 36086.0
2280 Female, age 85, left hemisphere 48982.5
2206 Male, age 80, both hemispheres 42198.9
2213 Female, age 67, left hemisphere 17076.6
Posterior thalamic nucleus
nTPM: 60574.8
2655 Male, age 74, right hemisphere 86293.7
2649 Female, age 94, both hemispheres 71628.9
2495 Female, age 67, right hemisphere 58968.1
2266 Male, age 76, right hemisphere 25408.4
Pulvinar
nTPM: 47877.5
2724 Male, age 74, right hemisphere 102660.4
2582 Female, age 72, unknown 62738.9
2398 Male, age 61, left hemisphere 48327.0
2499 Male, age 66, unknown 46749.3
1929 Male, age 48, unknown 42972.5
2214 Male, age 76, right hemisphere 40703.6
2496 Female, age 67, right hemisphere 38442.4
1899 Female, age 42, unknown 34263.4
1932 Male, age 80, right hemisphere 32280.4
1972 Male, age 62, unknown 29637.5
Subthalamic nucleus
nTPM: 32781.7
2658 Male, age 74, both hemispheres 60132.3
2406 Female, age 72, unknown 35571.5
2282 Male, age 61, both hemispheres 35319.1
2779 Female, age 42, unknown 34101.5
2216 Male, age 48, unknown 29217.2
2124 Male, age 62, unknown 26176.8
2275 Male, age 66, unknown 25645.9
2056 Female, age 72, unknown 16089.3
Ventral posterolateral thalamic nucleus
nTPM: 48322.2
2581 Female, age 72, unknown 85552.0
2570 Male, age 75, right hemisphere 63487.8
2578 Male, age 74, both hemispheres 38158.0
2740 Male, age 76, right hemisphere 36697.7
2397 Male, age 61, right hemisphere 33445.7
2197 Male, age 80, both hemispheres 32592.2
Ventral posteromedial thalamic nucleus
nTPM: 36114.8
2653 Male, age 74, both hemispheres 41919.2
2758 Male, age 80, both hemispheres 40626.7
2281 Male, age 75, right hemisphere 39201.3
2127 Male, age 76, right hemisphere 29776.2
2202 Male, age 61, left hemisphere 29050.7
Ventral thalamic nuclei
nTPM: 47381.5
2858 Female, age 72, unknown 85181.9
1845 Male, age 48, unknown 56204.5
2580 Male, age 66, unknown 55725.7
2204 Male, age 80, both hemispheres 52966.5
1860 Male, age 76, both hemispheres 44222.1
2285 Male, age 62, unknown 40141.1
1912 Female, age 42, unknown 35165.2
2652 Male, age 74, left hemisphere 31513.7
2291 Female, age 72, unknown 25312.8
Zona incerta
nTPM: 37144.3
2663 Female, age 72, unknown 52801.2
2822 Male, age 74, right hemisphere 44371.0
2208 Male, age 80, right hemisphere 41631.9
2403 Male, age 62, unknown 32767.6
2215 Male, age 66, unknown 14149.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51271.7
Pig sample Sample description nTPM
Thalamus
nTPM: 51271.7
Samples: 4

Max nTPM: 64224.9
Min nTPM: 33628.7
Sample A Female 64224.9
Sample B Female 43960.4
Sample C Male 63272.9
Sample D Male 33628.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37834.7
Mouse sample Sample description nTPM
Thalamus
nTPM: 37834.7
Samples: 4

Max nTPM: 42973.3
Min nTPM: 33880.0
Sample A Male 38563.8
Sample B Male 35921.8
Sample C Female 42973.3
Sample D Female 33880.0

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 20.7
81600592 Antisense, RP_090205_01_D01, Mouse strain C57BL/6J (56 days, male) 22.2
74357761 Antisense, RP_051219_04_A05, Mouse strain C57BL/6J (56 days, male) 19.3

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