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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
56989.4
nTPM
Pig:
52898.4
nTPM
Allen mouse:
19.8
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56989.4
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 36441.7
2301
Female, age 85, both hemispheres
55573.4
2188
Female, age 91, both hemispheres
32747.4
1984
Male, age 76, both hemispheres
32705.2
2090
Male, age 80, both hemispheres
24740.9
Dorsal cochlear nucleus nTPM: 45866.5
2378
Male, age 80, both hemispheres
65500.0
2802
Male, age 74, right hemisphere
64193.1
2058
Male, age 76, both hemispheres
39202.8
2187
Female, age 91, both hemispheres
30590.8
2370
Male, age 61, both hemispheres
29845.7
Dorsal tegmental nucleus nTPM: 39172.1
2358
Male, age 61, both hemispheres
59996.2
1936
Male, age 76, left hemisphere
36072.0
2083
Male, age 80, both hemispheres
32704.4
2326
Male, age 74, both hemispheres
27915.7
Dorsolateral tegmental area nTPM: 27268.6
2141
Male, age 76, both hemispheres
43167.6
2654
Male, age 80, both hemispheres
30427.2
2337
Male, age 61, both hemispheres
30103.2
2751
Female, age 85, both hemispheres
18419.5
2360
Male, age 74, both hemispheres
14225.3
Kolliker-Fuse nucleus nTPM: 37242.8
2793
Female, age 91, left hemisphere
61138.5
2163
Male, age 80, both hemispheres
37080.4
2315
Male, age 76, right hemisphere
13509.7
Lateral lemniscal nuclei nTPM: 34704.5
2320
Female, age 91, left hemisphere
51911.6
2453
Male, age 74, right hemisphere
47786.1
2169
Male, age 76, both hemispheres
35692.0
2036
Male, age 80, both hemispheres
26022.0
2746
Female, age 85, left hemisphere
12111.0
Lateral parabrachial nucleus nTPM: 23593.2
2790
Male, age 61, both hemispheres
35222.6
2792
Male, age 76, both hemispheres
22626.9
2139
Female, age 85, right hemisphere
20612.0
2013
Male, age 80, both hemispheres
15911.4
Lateral vestibular nucleus nTPM: 45028.4
2184
Male, age 76, both hemispheres
50900.9
2311
Male, age 80, both hemispheres
39156.0
Locus coeruleus nTPM: 47695.9
2720
Male, age 74, both hemispheres
89888.1
2162
Male, age 80, both hemispheres
60571.5
2788
Male, age 74, unknown
44022.4
2014
Male, age 55, unknown
37348.7
2317
Female, age 72, unknown
37046.8
1980
Male, age 76, both hemispheres
36791.8
2123
Female, age 91, both hemispheres
28202.0
Medial parabrachial nucleus nTPM: 30506.3
2854
Male, age 80, both hemispheres
43909.1
2786
Male, age 76, both hemispheres
39847.4
2156
Male, age 61, both hemispheres
34795.2
2170
Female, age 91, both hemispheres
20110.4
2463
Female, age 85, right hemisphere
13869.3
Medial periolivary nuclei nTPM: 33916.5
2458
Female, age 91, both hemispheres
60846.4
2171
Female, age 85, both hemispheres
38941.5
2063
Male, age 76, both hemispheres
27903.7
2791
Male, age 74, right hemisphere
21071.9
2081
Male, age 80, both hemispheres
20819.3
Motor facial nucleus nTPM: 56989.4
2795
Female, age 91, both hemispheres
116982.8
2327
Male, age 80, both hemispheres
75059.9
2697
Female, age 85, both hemispheres
70171.4
2062
Male, age 76, both hemispheres
28230.3
2365
Male, age 74, right hemisphere
26065.5
2126
Male, age 61, both hemispheres
25426.7
Motor trigeminal nucleus nTPM: 36072.9
2321
Female, age 91, both hemispheres
51078.3
2560
Male, age 74, both hemispheres
36720.8
2309
Male, age 76, both hemispheres
32977.6
2335
Male, age 61, both hemispheres
31536.6
2079
Male, age 80, both hemispheres
28051.0
Nuclei of the trapezoid body nTPM: 36891.2
2368
Female, age 91, both hemispheres
58505.2
2166
Male, age 80, both hemispheres
40263.0
1983
Male, age 76, both hemispheres
35898.8
2735
Female, age 85, both hemispheres
25443.2
2159
Male, age 61, both hemispheres
24345.7
Nucleus raphe magnus nTPM: 42684.1
2328
Male, age 80, both hemispheres
58004.5
2459
Female, age 91, both hemispheres
53742.8
2172
Female, age 85, both hemispheres
53151.8
2051
Male, age 76, both hemispheres
34761.2
2455
Male, age 74, both hemispheres
33312.2
2160
Male, age 61, both hemispheres
23131.8
Paramedian reticular nucleus nTPM: 31032.8
2313
Male, age 61, both hemispheres
41273.3
2050
Female, age 85, both hemispheres
32953.3
2052
Male, age 76, both hemispheres
30457.9
2057
Male, age 80, both hemispheres
19446.8
Pedunculopontine tegmental nucleus nTPM: 35252.1
2334
Male, age 80, both hemispheres
49300.7
2338
Male, age 61, both hemispheres
33800.3
1921
Female, age 85, both hemispheres
22655.5
Pontine nuclei nTPM: 24787.0
2319
Female, age 91, both hemispheres
37103.3
2787
Female, age 85, both hemispheres
32228.8
1863
Male, age 55, unknown
26465.7
2115
Male, age 80, left hemisphere
26336.2
1968
Male, age 76, left hemisphere
23813.0
2454
Male, age 74, left hemisphere
23290.9
2109
Female, age 72, unknown
16029.7
2727
Male, age 61, right hemisphere
13028.8
Pontine raphe nucleus nTPM: 34827.3
2853
Male, age 76, midline
41028.9
2122
Female, age 85, midline
28625.6
Posteroventral cochlear nucleus nTPM: 27300.0
2341
Male, age 80, both hemispheres
39222.1
2371
Male, age 61, both hemispheres
31655.0
2752
Female, age 85, both hemispheres
27780.3
2070
Male, age 76, both hemispheres
21493.1
2135
Female, age 91, both hemispheres
16349.6
Principal sensory trigeminal nucleus nTPM: 37978.5
2324
Male, age 76, both hemispheres
61427.4
2367
Female, age 91, left hemisphere
47708.6
2008
Male, age 80, left hemisphere
21869.4
2158
Male, age 61, both hemispheres
20908.7
Reticular pontine nucleus, caudal nTPM: 43269.4
2332
Male, age 80, right hemisphere
64301.7
2457
Female, age 91, both hemispheres
55365.3
2092
Male, age 76, both hemispheres
26986.7
2559
Male, age 74, both hemispheres
26424.0
Reticular pontine nucleus, oral nTPM: 30424.1
2366
Female, age 91, both hemispheres
59592.1
2167
Male, age 76, both hemispheres
35816.2
1939
Male, age 80, both hemispheres
21646.2
2012
Female, age 85, both hemispheres
17813.2
2361
Male, age 74, both hemispheres
17252.7
Reticulotegmental nucleus nTPM: 54598.8
2322
Female, age 91, both hemispheres
65322.9
2333
Male, age 80, both hemispheres
62380.2
2325
Male, age 76, both hemispheres
47079.2
2452
Male, age 74, both hemispheres
43612.8
Spinal trigeminal nucleus, oral nTPM: 38096.5
2164
Male, age 80, both hemispheres
61930.4
1978
Male, age 76, both hemispheres
29695.1
2737
Female, age 85, both hemispheres
22664.0
Subcoeruleus area nTPM: 28417.4
2451
Male, age 74, both hemispheres
34710.0
2323
Female, age 91, left hemisphere
33475.8
1958
Male, age 80, both hemispheres
31587.3
2089
Male, age 76, left hemisphere
25754.7
2369
Female, age 85, left hemisphere
16559.5
Superior olive nTPM: 35581.5
2561
Female, age 91, both hemispheres
66733.2
2329
Male, age 80, right hemisphere
56400.2
1875
Female, age 85, both hemispheres
20262.9
2020
Male, age 76, both hemispheres
20111.1
2364
Male, age 74, right hemisphere
14400.1
Ventral periolivary nuclei nTPM: 41294.1
2794
Female, age 91, left hemisphere
63430.7
2165
Male, age 80, both hemispheres
50309.5
2130
Female, age 85, both hemispheres
32307.5
2023
Male, age 76, both hemispheres
19128.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 45164.7
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52898.4
Pig sample
Sample description
nTPM
Pons nTPM: 52898.4
Samples: 4
Max nTPM: 66211.4
Min nTPM: 41121.4
Sample A
Female
56191.1
Sample B
Female
41121.4
Sample C
Male
48069.8
Sample D
Male
66211.4
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
