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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1193.1 nTPM
HPA Brain:1781.1 nTPM
GTEx:1193.1 nTPM
FANTOM5:1933.5 Scaled Tags Per Million
Pig:1411.8 nTPM
Mouse:813.0 nTPM
Allen mouse:30.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1781.1
Sample id Sample description nTPM
Amygdala
nTPM: 1781.1
2814 Male, age 76, right hemisphere 2093.2
1987 Female, age 91, left hemisphere 1873.4
2695 Female, age 67, right hemisphere 1767.9
2514 Male, age 75, right hemisphere 1725.8
2517 Female, age 94, left hemisphere 1445.1
Basal amygdala
nTPM: 1513.9
2110 Male, age 80, left hemisphere 1862.8
1955 Male, age 76, both hemispheres 1642.3
2243 Female, age 91, right hemisphere 1600.0
2685 Female, age 94, left hemisphere 1516.1
2609 Male, age 75, right hemisphere 1364.9
2827 Female, age 67, right hemisphere 1097.5
Central amygdala
nTPM: 1623.7
2239 Male, age 80, left hemisphere 1760.1
1905 Male, age 76, both hemispheres 1715.6
2826 Female, age 94, left hemisphere 1675.7
2515 Male, age 75, right hemisphere 1613.8
2701 Female, age 91, right hemisphere 1353.4
Corticomedial amygdala
nTPM: 1553.6
2829 Male, age 80, left hemisphere 1786.3
2242 Female, age 91, right hemisphere 1776.1
2240 Male, age 76, both hemispheres 1612.0
2429 Female, age 94, left hemisphere 1502.0
2428 Male, age 75, right hemisphere 1486.2
2535 Female, age 67, right hemisphere 1159.2
Lateral amygdala
nTPM: 1561.0
2534 Female, age 94, left hemisphere 2067.6
1883 Male, age 76, both hemispheres 1698.6
2256 Male, age 80, left hemisphere 1634.4
2516 Male, age 75, right hemisphere 1451.4
2255 Female, age 91, right hemisphere 1300.9
2830 Female, age 67, right hemisphere 1213.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1193.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1193.1
Samples: 152

Max nTPM: 2650.2
Min nTPM: 601.2
Std nTPM: 312.8
Median nTPM: 1167.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2650.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1954.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1949.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1900.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1875.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1816.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1782.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1755.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1740.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1728.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1722.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1718.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1616.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1602.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1591.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1589.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1578.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1569.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1566.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1544.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1535.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1527.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1490.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1489.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1476.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1473.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1467.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1436.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1434.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1432.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1420.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1414.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1410.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1409.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1396.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1388.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1380.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1372.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1365.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1365.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1361.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1360.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1356.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1326.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1320.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1318.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1318.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1312.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1310.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1303.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1300.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1296.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1277.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1270.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1270.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1253.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1250.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1248.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1245.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1243.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1241.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1238.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1236.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1220.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1199.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1198.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1197.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1196.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1193.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1190.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1190.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1189.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1189.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1187.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1173.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1168.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1165.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1165.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1159.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1157.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1153.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1138.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1130.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1123.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1121.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1112.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1110.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1109.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1109.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1101.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1053.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1052.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1047.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1047.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1045.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1042.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1039.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1038.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1027.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1015.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1009.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1006.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1003.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 997.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 991.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 989.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 987.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 980.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 971.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 971.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 968.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 961.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 955.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 952.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 949.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 942.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 941.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 940.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 937.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 935.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 935.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 920.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 915.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 914.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 913.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 910.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 903.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 902.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 897.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 894.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 893.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 890.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 886.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 877.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 862.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 858.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 855.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 851.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 844.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 844.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 833.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 830.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 822.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 814.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 747.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 741.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 726.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 723.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 702.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 662.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 616.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 601.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1933.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1933.5
FF:10151-102I7 76 years, female 1933.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1411.8
Pig sample Sample description nTPM
Amygdala
nTPM: 1411.8
Samples: 4

Max nTPM: 1943.4
Min nTPM: 1219.0
Sample A Female 1943.4
Sample B Female 1245.6
Sample C Male 1239.1
Sample D Male 1219.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

813.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 813.1
Samples: 4

Max nTPM: 861.1
Min nTPM: 772.5
Sample A Male 861.1
Sample B Male 791.3
Sample C Female 827.3
Sample D Female 772.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

30.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 30.9
81600126 Antisense, RP_080306_03_B07, Mouse strain C57BL/6J (56 days, male) 34.1
74881516 Antisense, RP_060315_04_C04, Mouse strain C57BL/6J (56 days, male) 30.6
69514684 Antisense, RP_050419_03_H03, Mouse strain C57BL/6J (56 days, male) 27.8

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