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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1924.1 nTPM
HPA Brain:2482.2 nTPM
GTEx:1924.1 nTPM
FANTOM5:3346.0 Scaled Tags Per Million
Pig:3277.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2482.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2149.2
1981 Female, age 72, midline 2725.6
2565 Male, age 75, midline 2187.0
2816 Male, age 47, midline 2072.7
2194 Female, age 79, both hemispheres 1983.9
2048 Male, age 55, midline 1776.7
Cervical spinal cord, dorsal horn
nTPM: 2418.7
2173 Female, age 72, unknown 3072.3
2296 Male, age 66, both hemispheres 2795.4
2069 Male, age 47, both hemispheres 2672.0
2721 Male, age 90, both hemispheres 2049.5
2297 Male, age 75, both hemispheres 1969.6
1877 Male, age 55, unknown 1953.8
Cervical spinal cord, ventral horn
nTPM: 2482.2
2098 Female, age 72, unknown 3444.1
2295 Male, age 66, both hemispheres 2546.1
2480 Male, age 75, both hemispheres 2539.0
2809 Male, age 90, both hemispheres 2533.0
2068 Male, age 55, unknown 2064.1
2820 Female, age 79, both hemispheres 1766.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1924.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1924.1
Samples: 159

Max nTPM: 3216.6
Min nTPM: 759.1
Std nTPM: 511.6
Median nTPM: 1933.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 3216.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 3201.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 3153.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 3073.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3042.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 3015.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 3007.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 3004.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2906.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2840.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2804.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 2774.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 2762.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2733.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2721.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 2707.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2597.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 2588.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2562.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 2549.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 2534.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2515.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 2459.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2459.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 2447.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2436.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 2420.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2354.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2350.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 2340.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2319.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2296.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 2264.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 2256.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 2253.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2248.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 2187.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2185.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 2182.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2180.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2169.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 2161.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 2160.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 2155.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2151.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2143.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2137.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2124.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 2114.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2109.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 2107.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2092.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 2087.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2086.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2084.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 2075.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 2075.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2074.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 2072.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 2068.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 2057.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 2048.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 2045.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 2036.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2024.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2018.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 2009.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 2007.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2006.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1990.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1988.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1979.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1971.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1968.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1967.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1962.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1947.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1941.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1935.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1933.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1923.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1918.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1905.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1897.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1885.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1879.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1869.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1865.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1858.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1849.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1835.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1828.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1820.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1775.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1768.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1761.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1753.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1753.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1750.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1725.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1707.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1692.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1691.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1678.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1677.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1676.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1671.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1661.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1646.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1628.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 1622.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1612.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1599.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1596.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1569.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1547.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1545.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1543.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1543.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1542.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1518.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1512.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1508.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1499.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1491.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1478.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1469.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1468.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1463.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1459.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1457.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1447.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1440.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1436.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1431.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1426.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1417.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1369.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1359.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1354.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1321.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1319.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 1302.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1298.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1284.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1266.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1250.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1235.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1221.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1212.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1207.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1193.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1077.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1035.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1013.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 968.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 947.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 882.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 759.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3346.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 3346.0
FF:10181-103D1 60 years, female 3384.8
FF:10159-103A6 76 years, female 3307.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3277.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2952.4
Samples: 4

Max nTPM: 3651.8
Min nTPM: 2414.7
Sample A Female 2414.7
Sample B Female 2906.1
Sample C Male 3651.8
Sample D Male 2837.1
Ventral spinal cord
nTPM: 3277.2
Samples: 4

Max nTPM: 3425.0
Min nTPM: 3111.2
Sample A Female 3111.2
Sample B Female 3270.4
Sample C Male 3302.1
Sample D Male 3425.0

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