MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1271.7 nTPM
HPA Brain:1993.1 nTPM
GTEx:1271.7 nTPM
FANTOM5:2232.8 Scaled Tags Per Million
Pig:2633.2 nTPM
Mouse:591.4 nTPM
Allen mouse:23.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1993.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1741.5
2019 Male, age 18, unknown 1985.1
1870 Female, age 42, unknown 1962.9
1830 Male, age 51, unknown 1879.6
2411 Female, age 72, unknown 1873.3
1833 Male, age 53, unknown 1824.2
2828 Female, age 72, unknown 1769.7
2666 Male, age 74, left hemisphere 1756.1
1827 Male, age 72, unknown 1572.5
2586 Male, age 75, left hemisphere 1530.5
2219 Male, age 76, both hemispheres 1260.9
Dorsal raphe nucleus
nTPM: 1656.8
2750 Male, age 76, both hemispheres 1957.2
2298 Female, age 72, unknown 1719.9
1828 Male, age 53, unknown 1627.8
2016 Female, age 72, unknown 1499.4
2047 Male, age 72, unknown 1479.8
Inferior colliculus
nTPM: 1517.3
1848 Female, age 42, unknown 1582.3
2097 Female, age 72, unknown 1533.9
1890 Male, age 53, unknown 1489.3
2849 Male, age 72, unknown 1463.6
Median raphe nucleus
nTPM: 1792.2
2220 Male, age 76, midline 1792.2
Periaquaductal grey, anterior
nTPM: 1565.6
1947 Male, age 18, unknown 1637.9
1795 Male, age 51, unknown 1619.8
2502 Female, age 75, unknown 1439.1
Periaquaductal grey, dorsal
nTPM: 1431.8
2850 Male, age 76, both hemispheres 1614.9
1831 Male, age 72, unknown 1501.6
2464 Female, age 72, unknown 1373.8
1840 Male, age 53, unknown 1237.0
Periaquaductal grey, lateral
nTPM: 1598.9
2272 Male, age 74, both hemispheres 1846.4
2140 Male, age 76, both hemispheres 1496.3
2053 Male, age 18, unknown 1454.0
Pretectal area
nTPM: 1711.3
1817 Female, age 42, unknown 2036.3
2007 Male, age 72, unknown 1851.1
1815 Male, age 53, unknown 1829.9
2273 Male, age 74, both hemispheres 1797.1
1944 Female, age 72, unknown 1782.8
1816 Male, age 51, unknown 1667.7
2667 Female, age 75, unknown 1642.3
2407 Male, age 75, both hemispheres 1628.5
2224 Female, age 72, unknown 1595.2
2316 Male, age 76, right hemisphere 1516.5
2825 Male, age 18, unknown 1477.1
Red nucleus
nTPM: 1993.1
1865 Male, age 51, unknown 2212.3
1904 Male, age 53, unknown 2156.1
2769 Male, age 72, unknown 2143.7
2227 Male, age 72, unknown 2127.0
2785 Male, age 18, unknown 2123.0
1821 Female, age 72, unknown 2080.1
2725 Female, age 75, unknown 2069.7
1954 Female, age 42, unknown 2044.5
2503 Female, age 72, unknown 1969.5
2823 Male, age 76, right hemisphere 1894.3
2584 Male, age 75, left hemisphere 1707.2
2588 Male, age 74, left hemisphere 1390.2
Substantia nigra
nTPM: 1759.9
2583 Male, age 75, right hemisphere 2142.2
2590 Female, age 75, unknown 2063.9
1916 Female, age 42, unknown 1815.6
1851 Male, age 51, unknown 1772.7
1941 Male, age 53, unknown 1765.1
1889 Female, age 72, unknown 1748.4
2665 Male, age 74, both hemispheres 1689.6
2699 Male, age 18, unknown 1618.1
2409 Female, age 72, unknown 1571.0
2241 Male, age 72, unknown 1412.5
Superior colliculus
nTPM: 1678.7
1913 Female, age 42, unknown 2062.5
1995 Male, age 72, unknown 1951.7
2587 Male, age 74, left hemisphere 1948.0
1796 Male, age 53, unknown 1751.0
2261 Male, age 18, unknown 1749.2
2087 Female, age 72, unknown 1653.6
1839 Male, age 51, unknown 1565.8
2668 Female, age 75, unknown 1513.9
1895 Male, age 76, right hemisphere 1298.7
2664 Male, age 75, both hemispheres 1292.7
Ventral tegmental area
nTPM: 1835.2
2223 Female, age 72, unknown 2361.2
2218 Male, age 76, both hemispheres 1898.1
2410 Female, age 72, unknown 1885.6
1915 Female, age 42, unknown 1689.7
2021 Male, age 53, unknown 1638.3
1942 Male, age 51, unknown 1538.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1271.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1271.7
Samples: 139

Max nTPM: 3111.1
Min nTPM: 628.5
Std nTPM: 476.6
Median nTPM: 1106.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 3111.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 2922.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2824.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 2799.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 2744.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2634.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 2608.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 2455.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 2265.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2215.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 2102.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2232.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2232.8
FF:10158-103A5 76 years, female 2232.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2633.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2528.8
Samples: 4

Max nTPM: 2800.0
Min nTPM: 2229.5
Sample A Female 2800.0
Sample B Female 2229.5
Sample C Male 2539.8
Sample D Male 2546.0
Midbrain
nTPM: 2633.2
Samples: 4

Max nTPM: 4445.4
Min nTPM: 1725.7
Sample A Female 4445.4
Sample B Female 2315.1
Sample C Male 2046.5
Sample D Male 1725.7
Periaqueductal gray
nTPM: 1985.3
Samples: 3

Max nTPM: 2263.5
Min nTPM: 1700.5
Sample B Female 1992.0
Sample C Male 2263.5
Sample D Male 1700.5
Superior colliculi
nTPM: 2379.4
Samples: 4

Max nTPM: 2761.2
Min nTPM: 2077.8
Sample A Female 2761.2
Sample B Female 2077.8
Sample C Male 2346.4
Sample D Male 2332.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 591.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 591.4
Samples: 4

Max nTPM: 651.7
Min nTPM: 554.3
Sample A Male 651.7
Sample B Male 564.0
Sample C Female 554.3
Sample D Female 595.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 23.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.3
74881516 Antisense, RP_060315_04_C04, Mouse strain C57BL/6J (56 days, male) 25.3
81600126 Antisense, RP_080306_03_B07, Mouse strain C57BL/6J (56 days, male) 25.2
69514684 Antisense, RP_050419_03_H03, Mouse strain C57BL/6J (56 days, male) 19.4

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