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BRAIN BASAL GANGLIA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1266.7 nTPM
HPA Brain:2092.3 nTPM
GTEx:1266.7 nTPM
FANTOM5:3235.6 Scaled Tags Per Million
Pig:2077.9 nTPM
Mouse:1097.3 nTPM
Allen mouse:27.5 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041264Antibody HPA041271Antibody CAB002621
Glial cells Not detectedNot detectedMedium
Neuronal cells LowNot detectedMedium







BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2092.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1847.9
1857 Female, age 85, left hemisphere 2168.7
2846 Female, age 79, unknown 2114.2
2290 Female, age 72, unknown 2019.6
1854 Male, age 80, left hemisphere 1977.9
1781 Male, age 74, unknown 1944.9
2288 Male, age 75, left hemisphere 1776.6
2481 Female, age 94, left hemisphere 1497.5
2289 Male, age 61, right hemisphere 1283.7
Globus pallidus, externus
nTPM: 2043.9
2395 Male, age 75, both hemispheres 2900.7
2772 Female, age 79, unknown 2478.2
1996 Male, age 80, right hemisphere 2378.7
2646 Male, age 61, right hemisphere 1366.9
2567 Female, age 72, unknown 1095.1
Globus pallidus, internus
nTPM: 2092.3
2287 Male, age 75, right hemisphere 2738.1
2778 Female, age 91, both hemispheres 2254.4
2111 Female, age 85, right hemisphere 2121.6
1818 Male, age 74, unknown 2119.2
2037 Male, age 80, right hemisphere 2021.0
2483 Female, age 94, right hemisphere 1709.8
2566 Female, age 72, unknown 1682.0
Nucleus accumbens
nTPM: 1905.2
2698 Female, age 72, unknown 2310.1
1806 Female, age 85, left hemisphere 2292.6
1856 Female, age 91, right hemisphere 2085.8
1783 Male, age 74, unknown 2012.3
2286 Male, age 75, left hemisphere 1889.1
2732 Male, age 80, right hemisphere 1685.0
2391 Female, age 94, left hemisphere 1630.0
2824 Male, age 61, right hemisphere 1336.4
Nucleus basalis of Meynert
nTPM: 1713.3
2821 Male, age 75, both hemispheres 2163.5
2393 Male, age 80, right hemisphere 1686.6
2484 Female, age 94, left hemisphere 1647.5
2569 Male, age 61, both hemispheres 1355.7
Nucleus of the diagonal band
nTPM: 1764.2
1812 Female, age 91, both hemispheres 2160.2
2195 Female, age 85, both hemispheres 2043.7
2775 Male, age 80, right hemisphere 1898.8
1979 Male, age 74, unknown 1389.8
2029 Male, age 61, right hemisphere 1328.6
Putamen
nTPM: 1730.3
1838 Male, age 80, right hemisphere 1909.2
1829 Male, age 74, unknown 1882.5
2466 Female, age 79, unknown 1873.3
1937 Female, age 91, right hemisphere 1860.3
2482 Female, age 94, left hemisphere 1746.8
2489 Female, age 72, unknown 1491.3
2647 Male, age 75, left hemisphere 1348.9
Septal nuclei
nTPM: 1797.3
1960 Male, age 74, unknown 2086.3
2031 Female, age 72, unknown 2047.5
2629 Female, age 94, right hemisphere 1755.2
2199 Male, age 80, right hemisphere 1749.9
2009 Female, age 91, both hemispheres 1738.3
2059 Female, age 85, both hemispheres 1657.9
2394 Male, age 61, left hemisphere 1545.8
Stria terminalis, bed nucleus
nTPM: 1591.0
1974 Female, age 91, both hemispheres 1904.7
2486 Female, age 94, both hemispheres 1650.8
2201 Male, age 74, unknown 1217.4

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1266.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1198.3
Samples: 246

Max nTPM: 2364.5
Min nTPM: 526.3
Std nTPM: 313.6
Median nTPM: 1185.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 2364.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2152.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 2095.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1997.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1906.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1888.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1887.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1841.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1831.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1766.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1765.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1762.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1749.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1716.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1710.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1710.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1695.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1686.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1680.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1657.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1656.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1639.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1596.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1592.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1583.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1579.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1569.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1555.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1551.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1549.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1544.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1542.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1528.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1518.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1514.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1493.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1477.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1476.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1471.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1470.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1469.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1458.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1458.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1458.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1455.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1448.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1444.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1442.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1442.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1439.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1431.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1427.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1426.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1423.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1423.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1423.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1423.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1423.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1423.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1423.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1420.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1419.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1418.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1414.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1413.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1412.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1402.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1401.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1396.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1393.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1391.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1379.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1379.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1374.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1369.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1364.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1357.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1348.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1348.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1345.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1343.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1340.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1337.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1336.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1334.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1332.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1326.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1322.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1319.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1315.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1313.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1307.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1306.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1303.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1303.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1299.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1289.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1279.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1276.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1269.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1257.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1256.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1255.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1253.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1247.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1246.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1245.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1244.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1241.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1236.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1233.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1221.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1216.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1211.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1209.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1205.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1205.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1201.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1195.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1195.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1192.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1189.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1186.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1184.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1176.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 1167.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1166.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1164.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1164.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1149.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1145.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1145.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1144.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1132.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1131.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1128.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1125.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1123.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1118.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1111.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1108.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1108.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1098.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1093.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1093.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1083.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1081.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1080.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1079.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1076.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1074.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1071.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1065.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1062.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1054.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1053.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1051.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1043.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1038.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1028.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1025.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1024.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1023.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1016.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1016.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1014.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1009.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1008.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1008.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1003.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 998.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 997.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 996.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 995.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 995.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 985.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 984.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 982.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 981.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 976.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 974.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 973.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 971.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 971.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 971.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 971.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 968.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 964.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 964.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 949.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 943.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 936.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 936.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 919.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 916.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 915.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 913.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 913.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 906.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 904.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 901.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 899.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 897.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 897.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 896.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 886.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 878.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 876.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 870.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 862.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 861.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 860.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 848.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 847.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 847.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 845.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 843.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 842.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 834.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 833.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 808.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 803.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 802.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 795.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 793.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 784.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 775.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 772.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 770.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 762.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 752.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 751.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 741.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 738.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 736.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 720.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 714.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 713.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 700.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 697.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 667.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 667.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 642.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 629.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 616.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 526.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1266.7
Samples: 246

Max nTPM: 2886.4
Min nTPM: 396.0
Std nTPM: 337.7
Median nTPM: 1235.4
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 2886.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 2699.4
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 2539.2
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 2194.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 2134.4
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 2133.9
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 2034.9
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 1912.8
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 1893.4
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 1837.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 1825.2
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 1796.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 1786.8
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 1769.1
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 1768.3
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 1764.7
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 1754.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 1743.0
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 1723.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 1695.8
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 1689.7
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 1672.5
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 1646.2
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 1645.4
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 1643.0
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 1640.4
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 1615.8
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 1613.2
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 1594.9
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 1592.0
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 1591.4
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 1589.6
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 1580.2
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 1579.9
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 1574.4
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 1566.8
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 1560.0
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 1548.4
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 1544.4
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 1541.0
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 1535.0
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 1531.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 1528.6
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 1527.7
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 1526.3
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 1522.0
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 1515.0
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 1514.6
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 1510.9
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 1504.4
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 1498.1
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 1487.7
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 1476.0
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 1475.5
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 1472.8
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 1471.9
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 1457.1
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 1452.2
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 1451.1
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 1450.8
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 1446.2
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 1443.4
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 1440.5
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 1436.5
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 1435.4
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 1431.3
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 1421.1
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 1419.5
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 1416.8
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 1415.4
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 1414.7
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 1407.8
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 1404.2
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 1400.4
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 1398.7
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 1397.1
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 1396.1
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 1396.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 1391.2
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 1391.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 1387.9
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 1379.4
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 1378.5
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 1377.2
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 1374.7
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 1373.4
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 1361.6
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 1356.5
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 1355.7
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 1354.5
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 1349.9
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 1344.8
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 1343.2
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 1342.5
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 1342.3
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 1341.9
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 1338.5
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 1335.5
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 1332.2
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 1331.0
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 1325.6
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 1322.2
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 1318.0
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 1311.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 1308.9
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 1302.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 1288.8
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 1285.7
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 1282.7
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 1282.7
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 1282.0
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 1280.9
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 1279.9
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 1279.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 1278.7
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 1277.5
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 1271.8
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 1267.9
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 1261.7
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 1255.9
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 1248.4
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 1240.2
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 1236.9
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 1234.0
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 1232.9
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 1231.3
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 1228.5
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 1227.7
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 1226.7
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 1225.8
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 1223.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 1223.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 1209.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 1205.4
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 1204.1
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 1201.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 1200.3
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 1190.6
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 1186.5
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 1186.2
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 1178.9
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 1177.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 1176.2
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 1175.7
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 1172.2
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 1170.7
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 1170.7
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 1169.6
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 1167.9
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 1164.2
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 1164.1
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 1159.7
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 1159.1
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 1158.5
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 1152.3
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 1144.9
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 1144.8
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 1143.5
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 1142.1
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 1141.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 1139.2
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 1136.4
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 1135.2
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 1134.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 1131.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 1128.9
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 1127.2
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 1127.0
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 1124.7
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 1124.7
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 1121.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 1107.6
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 1103.2
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 1102.3
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 1098.0
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 1092.8
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 1077.8
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 1076.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 1068.7
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 1068.3
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 1056.8
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 1056.5
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 1056.2
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 1041.5
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 1031.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 1025.8
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 1025.5
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 1024.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 1024.3
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 1021.7
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 1016.6
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 1015.8
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 1013.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 1010.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 1002.1
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 998.3
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 997.4
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 994.2
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 977.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 974.1
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 968.6
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 967.4
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 964.6
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 962.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 956.7
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 951.3
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 948.6
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 942.5
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 939.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 933.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 932.6
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 927.1
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 926.0
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 924.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 920.4
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 912.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 904.4
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 900.3
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 896.2
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 894.8
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 891.8
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 881.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 874.0
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 864.5
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 861.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 857.4
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 846.6
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 831.8
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 827.4
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 826.9
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 795.0
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 784.9
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 766.8
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 753.0
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 752.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 751.7
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 738.4
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 738.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 713.6
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 705.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 698.3
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 668.6
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 663.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 640.5
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 617.2
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 396.0
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Brain - Putamen (basal ganglia)
Average nTPM: 1240.0
Samples: 205

Max nTPM: 2775.1
Min nTPM: 633.1
Std nTPM: 337.0
Median nTPM: 1190.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 2775.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 2509.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 2181.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 2129.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 2044.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 2013.3
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 2008.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 1948.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 1874.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 1868.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 1866.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1852.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 1764.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 1734.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 1732.2
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 1707.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 1706.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 1681.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 1673.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 1670.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 1655.4
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 1640.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 1637.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 1623.3
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 1618.9
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 1616.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 1615.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 1615.2
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 1611.9
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 1607.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1592.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 1587.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 1561.3
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 1544.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 1535.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 1528.8
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 1528.6
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 1520.4
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 1516.4
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1516.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 1515.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 1499.0
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 1494.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 1492.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 1488.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1476.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 1459.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 1456.3
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 1450.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 1439.7
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 1438.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 1422.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 1410.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 1409.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 1407.3
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 1406.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 1391.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 1383.5
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 1376.9
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 1374.6
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 1370.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 1362.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 1358.9
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 1357.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 1347.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 1336.6
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 1334.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1333.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 1330.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 1318.6
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 1312.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 1307.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1307.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 1302.5
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 1301.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 1286.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 1285.3
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 1279.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 1276.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 1272.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 1267.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 1265.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 1265.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 1260.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 1259.0
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 1258.0
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 1248.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 1246.4
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 1244.1
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 1243.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 1238.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 1233.8
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 1222.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 1218.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 1218.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 1216.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 1215.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 1213.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 1210.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 1208.5
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 1205.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 1205.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 1190.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 1189.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 1189.5
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 1189.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 1182.6
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 1172.1
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 1169.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 1163.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 1162.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 1151.7
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 1151.4
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 1140.4
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 1140.3
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 1137.0
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 1133.1
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 1127.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1125.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 1125.2
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 1123.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 1116.1
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 1107.6
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 1097.3
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 1093.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 1091.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 1089.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 1083.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1081.4
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 1078.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 1077.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 1077.6
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 1077.3
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 1077.2
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 1073.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1065.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 1064.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 1054.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 1045.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 1042.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 1035.9
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 1032.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 1029.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 1028.7
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 1028.6
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 1028.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 1028.0
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 1021.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 1017.3
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 1015.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 1015.0
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 1014.8
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 1010.8
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 1010.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 1005.2
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 1004.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 1002.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 1000.3
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 992.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 988.6
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 986.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 986.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 984.5
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 979.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 978.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 976.2
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 974.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 968.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 967.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 953.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 948.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 946.2
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 943.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 940.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 933.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 927.4
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 926.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 924.2
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 909.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 886.4
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 868.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 856.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 852.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 847.8
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 836.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 836.1
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 835.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 831.7
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 817.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 817.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 807.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 804.1
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 803.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 799.2
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 781.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 779.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 779.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 754.8
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 742.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 740.3
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 729.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 708.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 707.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 664.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 633.1
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3235.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2114.2
FF:10164-103B2 76 years, female 2114.2
Nucleus accumbens
Scaled Tags Per Million: 3235.6
FF:10037-101F1 23-56 years, mixed 3235.6
Putamen
Scaled Tags Per Million: 2494.9
FF:10176-103C5 60 years, female 2494.9
Globus pallidus
Scaled Tags Per Million: 2819.1
FF:10161-103A8 76 years, female 2871.2
FF:10175-103C4 60 years, female 2767.1

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2077.9
Pig sample Sample description nTPM
Caudate
nTPM: 1715.6
Samples: 4

Max nTPM: 1953.8
Min nTPM: 1481.6
Sample A Female 1569.8
Sample B Female 1857.3
Sample C Male 1953.8
Sample D Male 1481.6
Putamen
nTPM: 2077.9
Samples: 4

Max nTPM: 2325.7
Min nTPM: 1524.4
Sample A Female 2205.2
Sample B Female 1524.4
Sample C Male 2325.7
Sample D Male 2256.2
Septum
nTPM: 1967.5
Samples: 4

Max nTPM: 2234.1
Min nTPM: 1604.2
Sample A Female 1955.0
Sample B Female 1604.2
Sample C Male 2076.5
Sample D Male 2234.1
Ventral pallidum
nTPM: 1799.9
Samples: 4

Max nTPM: 2108.4
Min nTPM: 1456.7
Sample A Female 1456.7
Sample B Female 1796.3
Sample C Male 2108.4
Sample D Male 1838.0

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1097.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1097.4
Samples: 4

Max nTPM: 1200.7
Min nTPM: 1025.1
Sample A Male 1096.5
Sample B Male 1200.7
Sample C Female 1025.1
Sample D Female 1067.1
Septum
nTPM: 1034.9
Samples: 4

Max nTPM: 1116.4
Min nTPM: 932.2
Sample A Male 932.2
Sample B Male 1116.4
Sample C Female 1017.3
Sample D Female 1073.8
Ventral forebrain
nTPM: 917.8
Samples: 4

Max nTPM: 959.8
Min nTPM: 884.2
Sample A Male 884.2
Sample B Male 887.2
Sample C Female 959.8
Sample D Female 939.9

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 27.5
81600126 Antisense, RP_080306_03_B07, Mouse strain C57BL/6J (56 days, male) 30.9
74881516 Antisense, RP_060315_04_C04, Mouse strain C57BL/6J (56 days, male) 28.9
69514684 Antisense, RP_050419_03_H03, Mouse strain C57BL/6J (56 days, male) 22.7
Pallidum
Expression energy: 24.1
81600126 Antisense, RP_080306_03_B07, Mouse strain C57BL/6J (56 days, male) 26.5
74881516 Antisense, RP_060315_04_C04, Mouse strain C57BL/6J (56 days, male) 24.8
69514684 Antisense, RP_050419_03_H03, Mouse strain C57BL/6J (56 days, male) 20.9

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