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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:2928.1 nTPM
FANTOM5:2888.9 Scaled Tags Per Million
Pig:2601.6 nTPM
Allen mouse:20.8 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2928.1
Sample id Sample description nTPM
Area postrema
nTPM: 2160.4
2799 Male, age 61, both hemispheres 2790.4
2306 Male, age 80, both hemispheres 1974.2
2054 Male, age 76, both hemispheres 1716.7
Dorsal medullary reticular nucleus
nTPM: 1797.2
2040 Female, age 85, both hemispheres 1821.6
2088 Male, age 76, both hemispheres 1813.5
2373 Male, age 61, both hemispheres 1756.4
Dorsal motor vagal complex
nTPM: 1809.8
2133 Female, age 91, both hemispheres 2079.2
2185 Male, age 76, both hemispheres 2010.8
2813 Female, age 72, unknown 2001.4
2000 Male, age 74, unknown 1850.1
2807 Female, age 85, both hemispheres 1808.7
2643 Male, age 74, both hemispheres 1786.7
2844 Male, age 55, unknown 1609.8
2797 Male, age 61, both hemispheres 1331.8
Gigantocellular reticular nuclei, medullary
nTPM: 1859.5
2314 Male, age 61, both hemispheres 2406.8
2462 Male, age 74, both hemispheres 1947.1
2310 Male, age 80, both hemispheres 1855.5
2387 Female, age 91, both hemispheres 1705.4
1876 Female, age 85, both hemispheres 1672.4
2022 Male, age 76, right hemisphere 1569.9
Gigantocellular reticular nuclei, pars
nTPM: 1756.7
2336 Male, age 61, both hemispheres 2074.3
2330 Male, age 80, both hemispheres 1773.1
2706 Male, age 80, both hemispheres 1699.6
2084 Female, age 85, both hemispheres 1644.4
2168 Male, age 76, both hemispheres 1592.3
Inferior olive
nTPM: 2322.4
2563 Male, age 74, both hemispheres 2669.0
2178 Male, age 61, both hemispheres 2506.8
2085 Female, age 85, both hemispheres 2259.2
2628 Female, age 91, both hemispheres 2177.3
2379 Male, age 80, both hemispheres 1999.9
Lateral medullary reticular nucleus
nTPM: 2557.8
2305 Male, age 74, both hemispheres 4039.2
2852 Male, age 80, both hemispheres 2455.7
2374 Male, age 61, both hemispheres 2431.1
2804 Female, age 91, both hemispheres 2257.3
2190 Female, age 85, both hemispheres 2168.3
2044 Male, age 76, both hemispheres 1995.3
Medial olivary nucleus
nTPM: 2651.8
1943 Male, age 61, both hemispheres 3170.2
1962 Male, age 76, both hemispheres 2658.6
2851 Male, age 80, both hemispheres 2424.7
2138 Female, age 91, both hemispheres 2353.8
Medial vestibular nucleus
nTPM: 2100.0
2624 Male, age 61, both hemispheres 2765.3
2801 Male, age 74, both hemispheres 2690.9
2134 Male, age 76, both hemispheres 1861.6
2803 Female, age 91, both hemispheres 1852.1
2093 Male, age 80, both hemispheres 1742.9
2743 Female, age 85, both hemispheres 1687.2
Motor hypoglossal nucleus
nTPM: 2067.6
2182 Male, age 80, both hemispheres 2266.7
2461 Male, age 61, both hemispheres 2222.3
2125 Female, age 91, both hemispheres 2020.9
2132 Female, age 85, both hemispheres 2007.4
2277 Male, age 76, both hemispheres 1820.6
Nucleus ambiguus
nTPM: 2309.0
2071 Male, age 76, both hemispheres 2484.6
2096 Female, age 85, both hemispheres 2133.3
Nucleus cuneatus
nTPM: 1905.7
2808 Female, age 85, both hemispheres 2432.2
2564 Male, age 74, both hemispheres 2271.3
2376 Male, age 61, both hemispheres 1987.6
2380 Male, age 80, both hemispheres 1907.7
2100 Male, age 76, both hemispheres 1882.2
2131 Male, age 76, both hemispheres 1808.0
2381 Male, age 80, both hemispheres 1787.5
2562 Male, age 61, both hemispheres 1609.9
2805 Female, age 91, both hemispheres 1465.1
Nucleus gracilis
nTPM: 2212.6
2627 Male, age 74, both hemispheres 2547.1
2299 Female, age 85, both hemispheres 2158.8
2382 Male, age 80, both hemispheres 1931.9
Nucleus raphe obscurus
nTPM: 2348.4
2845 Female, age 85, midline 2442.4
2800 Male, age 61, midline 2325.6
2142 Male, age 76, midline 2277.3
Nucleus raphe pallidus
nTPM: 2928.1
1924 Male, age 61, midline 3940.5
2145 Male, age 76, midline 2503.3
2183 Male, age 80, midline 2340.6
Nucleus tractus solitarii
nTPM: 1666.8
2191 Female, age 85, both hemispheres 2130.0
2656 Male, age 76, both hemispheres 1705.1
2307 Male, age 80, both hemispheres 1532.9
2144 Female, age 91, right hemisphere 1299.1
Parvicellular reticular nuclei
nTPM: 1889.5
2119 Male, age 80, both hemispheres 2102.1
2095 Male, age 76, both hemispheres 1895.5
2558 Male, age 74, both hemispheres 1670.8
Parvicellular reticular nuclei, medullary
nTPM: 1906.5
2091 Female, age 85, both hemispheres 2070.7
2189 Female, age 91, both hemispheres 1995.8
2181 Male, age 80, left hemisphere 1653.0
Peritrigeminal nucleus
nTPM: 2415.9
2067 Female, age 85, both hemispheres 2769.3
2179 Male, age 61, both hemispheres 2265.2
2136 Male, age 76, both hemispheres 2213.3
Prepositus hypoglossal nucleus
nTPM: 1917.7
2855 Female, age 85, right hemisphere 2002.4
2086 Male, age 80, both hemispheres 1833.0
Spinal trigeminal nucleus, caudal
nTPM: 2091.7
2642 Male, age 74, both hemispheres 2170.7
2312 Male, age 61, both hemispheres 2143.6
2390 Female, age 91, both hemispheres 2113.8
2447 Male, age 76, both hemispheres 2019.9
2308 Male, age 80, both hemispheres 2010.5
Spinal trigeminal nucleus, interpolar
nTPM: 2041.0
2625 Male, age 61, both hemispheres 2695.3
2033 Male, age 80, both hemispheres 2007.7
2066 Male, age 76, right hemisphere 2003.9
2386 Female, age 85, both hemispheres 1857.3
2389 Female, age 91, both hemispheres 1640.7
Spinal vestibular nucleus
nTPM: 1952.1
2796 Male, age 61, both hemispheres 2351.6
2748 Male, age 76, both hemispheres 2072.4
2780 Male, age 80, both hemispheres 1864.3
2186 Female, age 91, both hemispheres 1837.3
2806 Female, age 85, both hemispheres 1818.9
2384 Male, age 74, both hemispheres 1768.2
Superior vestibular nucleus
nTPM: 1947.5
2383 Male, age 74, both hemispheres 1996.9
2015 Male, age 80, both hemispheres 1986.3
2061 Male, age 76, both hemispheres 1859.4
Ventral medullary reticular nucleus
nTPM: 1898.5
2372 Male, age 61, both hemispheres 1902.5
2060 Male, age 76, both hemispheres 1894.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 2262.9
2741 Female, age 85, both hemispheres 2368.9
2180 Male, age 61, both hemispheres 2343.5
2302 Female, age 91, both hemispheres 2262.1
2118 Male, age 80, both hemispheres 2205.6
1986 Male, age 76, both hemispheres 2134.7

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2888.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 2888.9
FF:10038-101F2 18-64 years, mixed 4380.3
FF:10174-103C3 60 years, female 2192.0
FF:10155-103A2 76 years, female 2094.4

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2601.6
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 2601.6
Samples: 4

Max nTPM: 3023.3
Min nTPM: 2110.9
Sample A Female 2455.1
Sample B Female 2110.9
Sample C Male 3023.3
Sample D Male 2817.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 20.8
74881516 Antisense, RP_060315_04_C04, Mouse strain C57BL/6J (56 days, male) 23.6
81600126 Antisense, RP_080306_03_B07, Mouse strain C57BL/6J (56 days, male) 21.2
69514684 Antisense, RP_050419_03_H03, Mouse strain C57BL/6J (56 days, male) 17.5

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