PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:1961.5 nTPM
FANTOM5:1935.0 Scaled Tags Per Million
Pig:1745.2 nTPM
Mouse:2455.0 nTPM
Allen mouse:5.5 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 1961.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 896.0
2301 Female, age 85, both hemispheres 995.5
2090 Male, age 80, both hemispheres 918.6
1984 Male, age 76, both hemispheres 836.1
2188 Female, age 91, both hemispheres 833.8
Area postrema
nTPM: 655.9
2054 Male, age 76, both hemispheres 950.1
2799 Male, age 61, both hemispheres 525.4
2306 Male, age 80, both hemispheres 492.3
Dorsal cochlear nucleus
nTPM: 958.0
2058 Male, age 76, both hemispheres 1120.8
2187 Female, age 91, both hemispheres 1094.4
2370 Male, age 61, both hemispheres 1012.3
2802 Male, age 74, right hemisphere 842.7
2378 Male, age 80, both hemispheres 719.8
Dorsal medullary reticular nucleus
nTPM: 1252.2
2040 Female, age 85, both hemispheres 1792.5
2088 Male, age 76, both hemispheres 1002.0
2373 Male, age 61, both hemispheres 962.1
Dorsal motor vagal complex
nTPM: 1131.9
2133 Female, age 91, both hemispheres 1629.6
2000 Male, age 74, unknown 1426.3
2813 Female, age 72, unknown 1421.1
2844 Male, age 55, unknown 1351.7
2643 Male, age 74, both hemispheres 989.9
2797 Male, age 61, both hemispheres 787.8
2185 Male, age 76, both hemispheres 733.5
2807 Female, age 85, both hemispheres 715.1
Dorsal tegmental nucleus
nTPM: 1115.6
2083 Male, age 80, both hemispheres 1333.7
2358 Male, age 61, both hemispheres 1194.1
1936 Male, age 76, left hemisphere 991.0
2326 Male, age 74, both hemispheres 943.5
Dorsolateral tegmental area
nTPM: 1104.7
2141 Male, age 76, both hemispheres 1334.1
2654 Male, age 80, both hemispheres 1288.0
2751 Female, age 85, both hemispheres 1115.7
2360 Male, age 74, both hemispheres 967.3
2337 Male, age 61, both hemispheres 818.6
Gigantocellular reticular nuclei, medullary
nTPM: 1093.3
1876 Female, age 85, both hemispheres 1482.0
2022 Male, age 76, right hemisphere 1404.0
2462 Male, age 74, both hemispheres 1108.4
2310 Male, age 80, both hemispheres 1019.4
2387 Female, age 91, both hemispheres 788.1
2314 Male, age 61, both hemispheres 757.6
Gigantocellular reticular nuclei, pars
nTPM: 1219.9
2084 Female, age 85, both hemispheres 1634.4
2168 Male, age 76, both hemispheres 1489.6
2336 Male, age 61, both hemispheres 1334.9
2706 Male, age 80, both hemispheres 821.6
2330 Male, age 80, both hemispheres 819.0
Inferior olive
nTPM: 768.5
2563 Male, age 74, both hemispheres 1023.8
2085 Female, age 85, both hemispheres 835.5
2628 Female, age 91, both hemispheres 771.2
2178 Male, age 61, both hemispheres 654.4
2379 Male, age 80, both hemispheres 557.6
Kolliker-Fuse nucleus
nTPM: 998.3
2163 Male, age 80, both hemispheres 1313.5
2793 Female, age 91, left hemisphere 885.7
2315 Male, age 76, right hemisphere 795.8
Lateral lemniscal nuclei
nTPM: 1258.3
2036 Male, age 80, both hemispheres 1568.1
2169 Male, age 76, both hemispheres 1555.3
2746 Female, age 85, left hemisphere 1389.7
2453 Male, age 74, right hemisphere 1022.0
2320 Female, age 91, left hemisphere 756.4
Lateral medullary reticular nucleus
nTPM: 978.0
2044 Male, age 76, both hemispheres 1357.6
2305 Male, age 74, both hemispheres 1038.6
2190 Female, age 85, both hemispheres 993.6
2374 Male, age 61, both hemispheres 902.5
2804 Female, age 91, both hemispheres 790.4
2852 Male, age 80, both hemispheres 785.1
Lateral parabrachial nucleus
nTPM: 1063.9
2139 Female, age 85, right hemisphere 1631.6
2013 Male, age 80, both hemispheres 1075.0
2790 Male, age 61, both hemispheres 1000.5
2792 Male, age 76, both hemispheres 548.3
Lateral vestibular nucleus
nTPM: 1095.0
2184 Male, age 76, both hemispheres 1134.7
2311 Male, age 80, both hemispheres 1055.3
Locus coeruleus
nTPM: 1961.5
2123 Female, age 91, both hemispheres 2847.4
2720 Male, age 74, both hemispheres 2103.8
2014 Male, age 55, unknown 2022.0
1980 Male, age 76, both hemispheres 1884.5
2317 Female, age 72, unknown 1780.1
2788 Male, age 74, unknown 1589.3
2162 Male, age 80, both hemispheres 1503.1
Medial olivary nucleus
nTPM: 674.3
2851 Male, age 80, both hemispheres 813.4
2138 Female, age 91, both hemispheres 756.1
1962 Male, age 76, both hemispheres 584.1
1943 Male, age 61, both hemispheres 543.6
Medial parabrachial nucleus
nTPM: 1174.7
2854 Male, age 80, both hemispheres 1319.5
2170 Female, age 91, both hemispheres 1306.7
2156 Male, age 61, both hemispheres 1269.9
2786 Male, age 76, both hemispheres 1075.6
2463 Female, age 85, right hemisphere 901.7
Medial periolivary nuclei
nTPM: 1109.9
2171 Female, age 85, both hemispheres 1752.2
2063 Male, age 76, both hemispheres 1490.4
2791 Male, age 74, right hemisphere 891.9
2081 Male, age 80, both hemispheres 768.3
2458 Female, age 91, both hemispheres 646.8
Medial vestibular nucleus
nTPM: 1340.9
2803 Female, age 91, both hemispheres 1505.8
2093 Male, age 80, both hemispheres 1491.3
2134 Male, age 76, both hemispheres 1315.9
2743 Female, age 85, both hemispheres 1297.6
2624 Male, age 61, both hemispheres 1281.1
2801 Male, age 74, both hemispheres 1154.0
Motor facial nucleus
nTPM: 1162.5
2062 Male, age 76, both hemispheres 1676.9
2697 Female, age 85, both hemispheres 1283.6
2365 Male, age 74, right hemisphere 1109.0
2327 Male, age 80, both hemispheres 1078.1
2126 Male, age 61, both hemispheres 1019.9
2795 Female, age 91, both hemispheres 807.8
Motor hypoglossal nucleus
nTPM: 1375.6
2461 Male, age 61, both hemispheres 1699.1
2132 Female, age 85, both hemispheres 1557.7
2125 Female, age 91, both hemispheres 1442.1
2182 Male, age 80, both hemispheres 1138.7
2277 Male, age 76, both hemispheres 1040.4
Motor trigeminal nucleus
nTPM: 1072.8
2079 Male, age 80, both hemispheres 1271.1
2335 Male, age 61, both hemispheres 1222.9
2309 Male, age 76, both hemispheres 1136.8
2560 Male, age 74, both hemispheres 903.0
2321 Female, age 91, both hemispheres 830.0
Nuclei of the trapezoid body
nTPM: 1328.5
2735 Female, age 85, both hemispheres 1778.8
2159 Male, age 61, both hemispheres 1604.2
1983 Male, age 76, both hemispheres 1603.7
2166 Male, age 80, both hemispheres 998.0
2368 Female, age 91, both hemispheres 657.8
Nucleus ambiguus
nTPM: 1388.6
2096 Female, age 85, both hemispheres 2141.9
2071 Male, age 76, both hemispheres 635.4
Nucleus cuneatus
nTPM: 828.2
2562 Male, age 61, both hemispheres 1148.0
2131 Male, age 76, both hemispheres 1065.6
2564 Male, age 74, both hemispheres 1024.5
2100 Male, age 76, both hemispheres 924.7
2376 Male, age 61, both hemispheres 859.3
2381 Male, age 80, both hemispheres 729.0
2805 Female, age 91, both hemispheres 642.6
2808 Female, age 85, both hemispheres 559.9
2380 Male, age 80, both hemispheres 500.1
Nucleus gracilis
nTPM: 623.1
2627 Male, age 74, both hemispheres 926.4
2382 Male, age 80, both hemispheres 510.5
2299 Female, age 85, both hemispheres 432.3
Nucleus raphe magnus
nTPM: 1366.2
2172 Female, age 85, both hemispheres 1940.6
2160 Male, age 61, both hemispheres 1887.5
2455 Male, age 74, both hemispheres 1410.1
2051 Male, age 76, both hemispheres 1125.7
2328 Male, age 80, both hemispheres 1102.0
2459 Female, age 91, both hemispheres 731.2
Nucleus raphe obscurus
nTPM: 718.5
2800 Male, age 61, midline 884.1
2845 Female, age 85, midline 844.7
2142 Male, age 76, midline 426.8
Nucleus raphe pallidus
nTPM: 929.6
2183 Male, age 80, midline 1494.4
1924 Male, age 61, midline 830.7
2145 Male, age 76, midline 463.9
Nucleus tractus solitarii
nTPM: 1087.8
2656 Male, age 76, both hemispheres 1535.4
2144 Female, age 91, right hemisphere 1050.1
2307 Male, age 80, both hemispheres 990.2
2191 Female, age 85, both hemispheres 775.3
Paramedian reticular nucleus
nTPM: 1466.9
2050 Female, age 85, both hemispheres 1668.7
2313 Male, age 61, both hemispheres 1659.0
2057 Male, age 80, both hemispheres 1549.8
2052 Male, age 76, both hemispheres 990.0
Parvicellular reticular nuclei
nTPM: 1114.3
2119 Male, age 80, both hemispheres 1330.6
2095 Male, age 76, both hemispheres 1073.9
2558 Male, age 74, both hemispheres 938.5
Parvicellular reticular nuclei, medullary
nTPM: 1438.0
2189 Female, age 91, both hemispheres 1693.8
2181 Male, age 80, left hemisphere 1340.0
2091 Female, age 85, both hemispheres 1280.0
Pedunculopontine tegmental nucleus
nTPM: 1222.0
2334 Male, age 80, both hemispheres 1408.8
1921 Female, age 85, both hemispheres 1272.3
2338 Male, age 61, both hemispheres 984.8
Peritrigeminal nucleus
nTPM: 1199.7
2179 Male, age 61, both hemispheres 1289.6
2067 Female, age 85, both hemispheres 1265.3
2136 Male, age 76, both hemispheres 1044.2
Pontine nuclei
nTPM: 1398.7
2787 Female, age 85, both hemispheres 2460.3
1863 Male, age 55, unknown 1720.5
2727 Male, age 61, right hemisphere 1597.2
1968 Male, age 76, left hemisphere 1398.6
2109 Female, age 72, unknown 1379.6
2115 Male, age 80, left hemisphere 915.2
2319 Female, age 91, both hemispheres 874.2
2454 Male, age 74, left hemisphere 843.5
Pontine raphe nucleus
nTPM: 1550.5
2122 Female, age 85, midline 1761.1
2853 Male, age 76, midline 1339.8
Posteroventral cochlear nucleus
nTPM: 1012.8
2752 Female, age 85, both hemispheres 1533.4
2070 Male, age 76, both hemispheres 1245.0
2371 Male, age 61, both hemispheres 989.7
2341 Male, age 80, both hemispheres 690.2
2135 Female, age 91, both hemispheres 605.4
Prepositus hypoglossal nucleus
nTPM: 1135.0
2855 Female, age 85, right hemisphere 1235.8
2086 Male, age 80, both hemispheres 1034.2
Principal sensory trigeminal nucleus
nTPM: 1208.4
2158 Male, age 61, both hemispheres 1636.0
2008 Male, age 80, left hemisphere 1369.6
2324 Male, age 76, both hemispheres 1038.4
2367 Female, age 91, left hemisphere 789.5
Reticular pontine nucleus, caudal
nTPM: 981.8
2092 Male, age 76, both hemispheres 1197.1
2332 Male, age 80, right hemisphere 1117.2
2559 Male, age 74, both hemispheres 931.3
2457 Female, age 91, both hemispheres 681.5
Reticular pontine nucleus, oral
nTPM: 1096.4
2012 Female, age 85, both hemispheres 1435.7
1939 Male, age 80, both hemispheres 1201.0
2167 Male, age 76, both hemispheres 1158.7
2361 Male, age 74, both hemispheres 952.5
2366 Female, age 91, both hemispheres 734.2
Reticulotegmental nucleus
nTPM: 1145.9
2325 Male, age 76, both hemispheres 1336.2
2452 Male, age 74, both hemispheres 1147.0
2333 Male, age 80, both hemispheres 1119.0
2322 Female, age 91, both hemispheres 981.3
Spinal trigeminal nucleus, caudal
nTPM: 1131.6
2390 Female, age 91, both hemispheres 1541.2
2447 Male, age 76, both hemispheres 1141.0
2308 Male, age 80, both hemispheres 1002.4
2312 Male, age 61, both hemispheres 994.6
2642 Male, age 74, both hemispheres 978.7
Spinal trigeminal nucleus, interpolar
nTPM: 1481.9
2066 Male, age 76, right hemisphere 1795.0
2033 Male, age 80, both hemispheres 1588.1
2625 Male, age 61, both hemispheres 1498.9
2386 Female, age 85, both hemispheres 1376.6
2389 Female, age 91, both hemispheres 1150.8
Spinal trigeminal nucleus, oral
nTPM: 1153.3
2737 Female, age 85, both hemispheres 1262.0
1978 Male, age 76, both hemispheres 1168.1
2164 Male, age 80, both hemispheres 1029.7
Spinal vestibular nucleus
nTPM: 1329.6
2186 Female, age 91, both hemispheres 1623.2
2780 Male, age 80, both hemispheres 1583.4
2796 Male, age 61, both hemispheres 1325.9
2806 Female, age 85, both hemispheres 1325.8
2748 Male, age 76, both hemispheres 1172.7
2384 Male, age 74, both hemispheres 946.4
Subcoeruleus area
nTPM: 1248.7
2323 Female, age 91, left hemisphere 1833.7
1958 Male, age 80, both hemispheres 1440.3
2089 Male, age 76, left hemisphere 1098.2
2451 Male, age 74, both hemispheres 1036.3
2369 Female, age 85, left hemisphere 835.2
Superior olive
nTPM: 1128.1
1875 Female, age 85, both hemispheres 1709.7
2020 Male, age 76, both hemispheres 1104.7
2364 Male, age 74, right hemisphere 1075.1
2329 Male, age 80, right hemisphere 978.6
2561 Female, age 91, both hemispheres 772.3
Superior vestibular nucleus
nTPM: 1078.4
2015 Male, age 80, both hemispheres 1232.6
2383 Male, age 74, both hemispheres 1014.8
2061 Male, age 76, both hemispheres 987.9
Ventral medullary reticular nucleus
nTPM: 1034.5
2060 Male, age 76, both hemispheres 1251.8
2372 Male, age 61, both hemispheres 817.1
Ventral periolivary nuclei
nTPM: 1267.8
2130 Female, age 85, both hemispheres 1850.8
2165 Male, age 80, both hemispheres 1372.0
2023 Male, age 76, both hemispheres 1028.2
2794 Female, age 91, left hemisphere 820.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1065.3
2741 Female, age 85, both hemispheres 1368.1
1986 Male, age 76, both hemispheres 1227.0
2180 Male, age 61, both hemispheres 1119.4
2302 Female, age 91, both hemispheres 868.5
2118 Male, age 80, both hemispheres 743.7
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1052.3
2840 Female, age 85, both hemispheres 1349.6
1959 Male, age 76, both hemispheres 1199.4
2449 Male, age 74, both hemispheres 1088.7
2359 Male, age 61, both hemispheres 1085.1
2161 Male, age 80, both hemispheres 978.2
2456 Female, age 91, both hemispheres 612.5

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1935.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1935.0
FF:10182-103D2 60 years, female 2227.5
FF:10165-103B3 76 years, female 1642.5
Medulla oblongata
Scaled Tags Per Million: 1077.6
FF:10038-101F2 18-64 years, mixed 1238.7
FF:10155-103A2 76 years, female 1102.0
FF:10174-103C3 60 years, female 892.3
Pons
Scaled Tags Per Million: 1680.8
FF:10033-101E6 18-54 years, mixed 1680.8

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 1745.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 1578.9
Samples: 4

Max nTPM: 1781.5
Min nTPM: 1373.9
Sample A Female 1781.5
Sample B Female 1490.6
Sample C Male 1669.7
Sample D Male 1373.9
Pons
nTPM: 1745.2
Samples: 4

Max nTPM: 1922.0
Min nTPM: 1499.7
Sample A Female 1839.7
Sample B Female 1719.5
Sample C Male 1922.0
Sample D Male 1499.7

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 2455.0
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 2455.1
Samples: 4

Max nTPM: 2527.5
Min nTPM: 2408.8
Sample A Male 2408.8
Sample B Male 2436.8
Sample C Female 2527.5
Sample D Female 2447.1

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 5.5
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 5.5
509 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 16.6
510 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 11.3
511 Sense, RPS_Baylor_36998, Mouse strain C57BL/6J (56 days, male) 0.0
70230813 Antisense, RP_050524_04_E07, Mouse strain C57BL/6J (56 days, male) 0.0
Pons
Expression energy: 5.1
509 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 15.3
510 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 11.3
511 Sense, RPS_Baylor_36998, Mouse strain C57BL/6J (56 days, male) 0.1
70230813 Antisense, RP_050524_04_E07, Mouse strain C57BL/6J (56 days, male) 0.0

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