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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1410.5 nTPM
FANTOM5:541.1 Scaled Tags Per Million
Pig:1630.2 nTPM
Mouse:2053.1 nTPM
Allen mouse:7.1 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1410.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 833.4
2032 Female, age 42, unknown 884.8
2396 Male, age 61, right hemisphere 852.3
2497 Male, age 66, unknown 763.1
Centromedial thalamic nucleus
nTPM: 664.9
2401 Male, age 76, right hemisphere 999.3
2279 Female, age 85, left hemisphere 330.4
Habenula
nTPM: 1410.5
2203 Male, age 61, left hemisphere 1938.9
1957 Male, age 80, both hemispheres 1357.8
2276 Male, age 66, unknown 1175.2
2252 Male, age 62, unknown 1170.2
Lateral geniculate body
nTPM: 1014.2
2106 Female, age 67, right hemisphere 1638.2
1953 Male, age 62, unknown 1336.4
2035 Female, age 72, unknown 1022.2
2399 Male, age 61, left hemisphere 934.3
2857 Male, age 74, right hemisphere 910.9
2841 Male, age 80, both hemispheres 777.1
2659 Male, age 66, unknown 775.9
2575 Female, age 94, right hemisphere 718.6
Lateral thalamic nuclei
nTPM: 896.2
1903 Male, age 76, left hemisphere 1191.8
2765 Female, age 67, both hemispheres 970.0
2577 Male, age 74, both hemispheres 937.3
2573 Female, age 94, left hemisphere 745.6
2661 Female, age 72, unknown 636.3
Medial dorsal thalamic nucleus
nTPM: 1092.2
2498 Male, age 66, unknown 1665.9
2039 Female, age 72, unknown 1235.8
1971 Male, age 61, right hemisphere 1227.2
2492 Male, age 75, right hemisphere 1161.2
1810 Male, age 48, unknown 1158.1
1859 Male, age 76, both hemispheres 1141.1
2026 Male, age 62, unknown 1123.1
2572 Female, age 94, right hemisphere 1089.9
2576 Male, age 74, both hemispheres 1030.7
2283 Male, age 80, right hemisphere 1010.6
1930 Female, age 42, unknown 937.0
2402 Female, age 67, both hemispheres 861.6
2660 Female, age 72, unknown 555.9
Medial geniculate body
nTPM: 890.0
1811 Female, age 42, unknown 1033.2
2650 Female, age 94, left hemisphere 954.3
2207 Male, age 80, right hemisphere 900.6
2571 Male, age 75, right hemisphere 888.7
2049 Male, age 76, both hemispheres 869.9
2657 Male, age 74, right hemisphere 851.9
2217 Female, age 72, unknown 731.5
Nucleus reuniens
nTPM: 1024.3
2212 Female, age 67, left hemisphere 1509.4
2205 Male, age 80, left hemisphere 997.9
2210 Female, age 85, left hemisphere 565.4
Nucleus rhomboideus
nTPM: 846.0
2206 Male, age 80, both hemispheres 1240.9
2213 Female, age 67, left hemisphere 731.8
2280 Female, age 85, left hemisphere 565.3
Posterior thalamic nucleus
nTPM: 1019.5
2649 Female, age 94, both hemispheres 1322.4
2266 Male, age 76, right hemisphere 957.8
2655 Male, age 74, right hemisphere 946.3
2495 Female, age 67, right hemisphere 851.4
Pulvinar
nTPM: 962.2
1972 Male, age 62, unknown 1433.2
1932 Male, age 80, right hemisphere 1013.4
1929 Male, age 48, unknown 985.1
2496 Female, age 67, right hemisphere 979.1
2214 Male, age 76, right hemisphere 912.9
2499 Male, age 66, unknown 880.6
2724 Male, age 74, right hemisphere 878.0
2398 Male, age 61, left hemisphere 872.3
1899 Female, age 42, unknown 867.3
2582 Female, age 72, unknown 799.8
Subthalamic nucleus
nTPM: 1209.3
2406 Female, age 72, unknown 1769.8
2779 Female, age 42, unknown 1332.7
2124 Male, age 62, unknown 1329.1
2658 Male, age 74, both hemispheres 1256.0
2275 Male, age 66, unknown 1174.4
2282 Male, age 61, both hemispheres 1011.9
2056 Female, age 72, unknown 962.9
2216 Male, age 48, unknown 837.9
Ventral posterolateral thalamic nucleus
nTPM: 882.1
2740 Male, age 76, right hemisphere 1138.0
2197 Male, age 80, both hemispheres 1001.7
2578 Male, age 74, both hemispheres 983.3
2570 Male, age 75, right hemisphere 870.7
2397 Male, age 61, right hemisphere 815.8
2581 Female, age 72, unknown 483.3
Ventral posteromedial thalamic nucleus
nTPM: 975.0
2653 Male, age 74, both hemispheres 1118.0
2202 Male, age 61, left hemisphere 1080.7
2758 Male, age 80, both hemispheres 1002.1
2281 Male, age 75, right hemisphere 936.5
2127 Male, age 76, right hemisphere 737.7
Ventral thalamic nuclei
nTPM: 931.7
1845 Male, age 48, unknown 1144.4
1912 Female, age 42, unknown 1106.2
1860 Male, age 76, both hemispheres 1104.9
2291 Female, age 72, unknown 947.0
2285 Male, age 62, unknown 924.1
2652 Male, age 74, left hemisphere 891.8
2204 Male, age 80, both hemispheres 847.2
2580 Male, age 66, unknown 788.2
2858 Female, age 72, unknown 631.4
Zona incerta
nTPM: 841.0
2208 Male, age 80, right hemisphere 984.1
2822 Male, age 74, right hemisphere 911.4
2403 Male, age 62, unknown 824.9
2215 Male, age 66, unknown 797.9
2663 Female, age 72, unknown 686.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

541.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 541.1
FF:10154-103A1 76 years, female 541.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1630.2
Pig sample Sample description nTPM
Thalamus
nTPM: 1630.2
Samples: 4

Max nTPM: 2133.2
Min nTPM: 1300.3
Sample A Female 2133.2
Sample B Female 1300.3
Sample C Male 1716.1
Sample D Male 1371.0

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2053.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 2053.1
Samples: 4

Max nTPM: 2231.9
Min nTPM: 1864.6
Sample A Male 1864.6
Sample B Male 2231.9
Sample C Female 1943.7
Sample D Female 2172.3

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 7.1
509 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 14.1
510 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 12.2
70230813 Antisense, RP_050524_04_E07, Mouse strain C57BL/6J (56 days, male) 0.0

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