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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:671.1 nTPM
GTEx:671.1 nTPM
FANTOM5:832.4 Scaled Tags Per Million
Pig:401.3 nTPM
Mouse:1163.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

671.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 671.1
Samples: 105

Max nTPM: 1380.9
Min nTPM: 315.4
Std nTPM: 187.6
Median nTPM:
506_1 65 years, male 1380.9
452_1 88 years, female 1117.8
173_1 67 years, male 1017.0
377_1 82 years, female 1015.2
295_1 61 years, female 967.1
264_1 73 years, female 965.3
379_1 60 years, male 951.8
316_1 62 years, male 931.2
177_1 74 years, male 912.1
322_1 76 years, male 899.7
351_1 91 years, male 890.8
376_1 75 years, female 876.0
406_1 79 years, male 870.7
386_1 76 years, male 867.5
163_1 78 years, male 863.6
394_1 75 years, female 862.6
356_1 87 years, female 858.7
375_1 74 years, female 839.8
318_1 68 years, male 828.1
353_1 82 years, female 827.5
237_1 82 years, male 824.8
243_1 75 years, male 820.8
425_1 59 years, female 819.9
172_1 72 years, female 816.8
319_1 81 years, male 816.7
288_1 66 years, female 797.8
320_1 89 years, female 797.0
286_1 68 years, female 796.4
321_1 62 years, female 790.1
292_1 71 years, male 783.1
384_1 83 years, male 777.7
404_1 82 years, female 774.7
352_1 62 years, male 771.7
2_1 77 years, female 769.6
218_1 71 years, female 753.2
335_1 73 years, female 743.1
17_1 71 years, male 737.9
317_1 60 years, male 736.4
349_1 83 years, male 735.1
447_1 81 years, male 733.8
293_1 68 years, female 728.5
396_1 62 years, male 727.8
503_1 68 years, male 727.2
254_1 77 years, female 717.5
4_1 88 years, female 714.7
347_1 72 years, male 704.9
350_1 84 years, female 701.5
229_1 69 years, female 692.1
405_1 91 years, male 683.9
266_1 85 years, male 671.0
526_1 61 years, male 670.6
6_1 73 years, female 670.2
291_1 76 years, male 656.2
480_1 63 years, male 656.0
501_1 88 years, male 644.0
348_1 84 years, male 643.4
99_1 64 years, male 638.6
41_1 94 years, female 628.3
354_1 81 years, female 627.7
145_1 84 years, male 624.2
313_1 79 years, female 620.5
35_1 74 years, female 620.3
355_1 70 years, female 618.9
314_1 67 years, male 618.7
137_1 83 years, male 608.8
189_1 76 years, male 600.7
120_1 70 years, female 594.4
246_1 77 years, male 594.0
139_1 64 years, female 591.7
315_1 62 years, female 585.9
142_1 61 years, female 581.2
517_1 88 years, male 578.7
115_1 83 years, male 577.4
324_1 76 years, male 577.3
468_1 89 years, male 573.3
109_1 81 years, female 569.3
265_1 87 years, male 557.0
153_1 70 years, female 553.7
18_1 88 years, male 549.3
311_1 78 years, male 541.0
413_1 59 years, female 540.8
126_1 63 years, male 534.7
307_1 66 years, female 532.1
518_1 75 years, female 527.9
42_1 85 years, male 526.1
251_1 78 years, male 525.4
389_1 86 years, female 511.6
499_1 55 years, female 506.7
119_1 70 years, female 495.8
9_1 66 years, female 468.1
414_1 84 years, female 444.0
308_1 70 years, female 437.7
117_1 61 years, male 435.5
217_1 76 years, male 420.2
43_1 64 years, female 405.4
81_1 67 years, male 403.4
495_1 57 years, female 395.7
466_1 57 years, female 379.3
415_1 77 years, female 377.1
32_1 67 years, male 364.5
89_1 63 years, male 356.5
491_1 89 years, female 331.5
149_1 88 years, male 325.5
162_1 79 years, female 320.9
490_1 67 years, female 315.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

832.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 832.4
FF:10030-101E3 24-65 years, mixed 832.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

401.3
Pig sample Sample description nTPM
Retina
nTPM: 401.3
Samples: 4

Max nTPM: 476.8
Min nTPM: 352.5
Sample A Female 352.5
Sample B Female 476.8
Sample C Male 403.0
Sample D Male 372.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1163.3
Mouse sample Sample description nTPM
Retina
nTPM: 1163.3
Samples: 4

Max nTPM: 1278.1
Min nTPM: 1087.0
Sample A Male 1087.0
Sample B Male 1152.2
Sample C Female 1278.1
Sample D Female 1135.9

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