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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:352.0 nTPM
HPA Brain:1230.9 nTPM
GTEx:352.0 nTPM
FANTOM5:913.5 Scaled Tags Per Million
Pig:1285.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1230.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 995.3
2194 Female, age 79, both hemispheres 1355.0
1981 Female, age 72, midline 1227.6
2565 Male, age 75, midline 831.7
2048 Male, age 55, midline 805.9
2816 Male, age 47, midline 756.2
Cervical spinal cord, dorsal horn
nTPM: 1230.9
2721 Male, age 90, both hemispheres 1428.8
2069 Male, age 47, both hemispheres 1393.4
2297 Male, age 75, both hemispheres 1250.7
2173 Female, age 72, unknown 1245.9
1877 Male, age 55, unknown 1162.5
2296 Male, age 66, both hemispheres 903.8
Cervical spinal cord, ventral horn
nTPM: 984.3
2068 Male, age 55, unknown 1108.7
2295 Male, age 66, both hemispheres 1062.4
2820 Female, age 79, both hemispheres 1014.4
2480 Male, age 75, both hemispheres 1006.4
2098 Female, age 72, unknown 868.2
2809 Male, age 90, both hemispheres 845.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

352.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 352.0
Samples: 159

Max nTPM: 926.6
Min nTPM: 196.6
Std nTPM: 106.4
Median nTPM: 329.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 926.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 859.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 796.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 669.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 665.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 532.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 530.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 530.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 530.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 529.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 525.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 511.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 499.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 493.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 490.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 480.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 472.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 449.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 445.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 443.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 430.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 429.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 428.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 420.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 418.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 418.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 410.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 409.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 408.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 407.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 397.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 392.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 389.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 387.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 384.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 384.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 381.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 378.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 378.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 378.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 374.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 370.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 368.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 367.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 366.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 364.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 364.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 363.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 361.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 359.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 358.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 357.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 356.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 356.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 355.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 355.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 354.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 353.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 352.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 351.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 351.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 350.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 349.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 348.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 348.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 345.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 344.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 341.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 341.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 340.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 339.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 338.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 332.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 331.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 331.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 330.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 330.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 330.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 330.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 329.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 329.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 327.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 324.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 324.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 323.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 323.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 323.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 322.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 321.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 317.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 317.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 316.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 316.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 316.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 315.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 312.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 312.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 311.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 311.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 311.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 310.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 309.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 309.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 308.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 306.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 305.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 304.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 303.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 302.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 301.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 301.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 300.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 299.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 298.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 298.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 295.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 294.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 294.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 289.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 289.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 288.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 286.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 286.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 284.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 281.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 280.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 280.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 277.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 275.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 275.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 274.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 273.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 273.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 271.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 271.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 271.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 269.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 267.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 266.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 266.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 266.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 265.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 263.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 263.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 262.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 261.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 257.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 255.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 251.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 249.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 246.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 245.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 241.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 235.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 229.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 217.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 216.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 207.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 196.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

913.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 913.5
FF:10181-103D1 60 years, female 1238.7
FF:10159-103A6 76 years, female 588.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1285.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1285.1
Samples: 4

Max nTPM: 1496.6
Min nTPM: 1090.8
Sample A Female 1368.1
Sample B Female 1184.7
Sample C Male 1090.8
Sample D Male 1496.6
Ventral spinal cord
nTPM: 1164.0
Samples: 4

Max nTPM: 1320.7
Min nTPM: 987.9
Sample A Female 987.9
Sample B Female 1181.2
Sample C Male 1166.3
Sample D Male 1320.7

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