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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2981.6 nTPM
HPA Brain:1792.8 nTPM
GTEx:2981.6 nTPM
FANTOM5:1107.5 Scaled Tags Per Million
Pig:1565.1 nTPM
Mouse:3155.8 nTPM
Allen mouse:36.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1792.8
Sample id Sample description nTPM
Amygdala
nTPM: 1792.8
2814 Male, age 76, right hemisphere 2150.0
2695 Female, age 67, right hemisphere 1925.5
2514 Male, age 75, right hemisphere 1817.2
1987 Female, age 91, left hemisphere 1570.9
2517 Female, age 94, left hemisphere 1500.5
Basal amygdala
nTPM: 1528.1
2609 Male, age 75, right hemisphere 1896.5
2243 Female, age 91, right hemisphere 1659.0
2110 Male, age 80, left hemisphere 1629.3
1955 Male, age 76, both hemispheres 1582.2
2685 Female, age 94, left hemisphere 1381.7
2827 Female, age 67, right hemisphere 1020.0
Central amygdala
nTPM: 1732.7
1905 Male, age 76, both hemispheres 1961.3
2826 Female, age 94, left hemisphere 1909.0
2515 Male, age 75, right hemisphere 1828.6
2239 Male, age 80, left hemisphere 1580.5
2701 Female, age 91, right hemisphere 1384.0
Corticomedial amygdala
nTPM: 1510.4
2428 Male, age 75, right hemisphere 1878.1
2829 Male, age 80, left hemisphere 1629.5
2242 Female, age 91, right hemisphere 1546.7
2240 Male, age 76, both hemispheres 1488.4
2429 Female, age 94, left hemisphere 1437.3
2535 Female, age 67, right hemisphere 1082.4
Lateral amygdala
nTPM: 1527.4
1883 Male, age 76, both hemispheres 1949.0
2534 Female, age 94, left hemisphere 1797.4
2516 Male, age 75, right hemisphere 1763.1
2256 Male, age 80, left hemisphere 1291.3
2255 Female, age 91, right hemisphere 1264.2
2830 Female, age 67, right hemisphere 1099.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2981.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2981.6
Samples: 152

Max nTPM: 6029.0
Min nTPM: 1588.8
Std nTPM: 715.3
Median nTPM: 2894.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 6029.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 5429.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 5048.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4819.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4615.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 4547.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 4382.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 4359.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 4348.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 4195.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 4185.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 4061.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3939.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 3932.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 3855.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 3717.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 3706.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 3699.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 3697.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3677.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3637.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 3597.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 3578.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 3576.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 3574.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 3569.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3555.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 3552.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 3528.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 3526.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 3522.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 3519.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 3485.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 3442.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 3424.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 3422.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 3351.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 3350.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 3348.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 3331.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 3325.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 3294.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 3287.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 3271.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 3257.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 3222.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 3220.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 3204.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 3200.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 3195.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3184.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 3159.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 3134.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 3108.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 3101.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 3096.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 3089.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 3064.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 3054.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3052.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 3041.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 3026.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 3020.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 3004.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2979.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 2962.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 2958.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 2941.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2919.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2910.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 2906.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 2903.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2901.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2900.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 2900.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2895.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 2893.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2883.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 2880.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 2872.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2867.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 2852.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2846.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2828.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 2813.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2784.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 2754.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2741.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2732.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2718.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2712.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2705.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 2687.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2670.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 2666.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 2642.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2641.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2636.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2635.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2613.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2611.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2608.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 2607.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2590.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 2585.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2580.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2569.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 2566.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2560.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2553.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2550.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2543.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2542.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2540.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2525.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 2523.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2513.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2512.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2507.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2468.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2457.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 2451.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 2435.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 2426.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2391.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 2371.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2353.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2346.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 2341.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2326.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2320.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 2298.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2295.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2285.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2250.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2216.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2215.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2214.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2161.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 2145.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2105.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2091.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2077.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 2064.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2015.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2003.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1884.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1847.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1843.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1790.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1605.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1588.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1107.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1107.5
FF:10151-102I7 76 years, female 1107.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1565.1
Pig sample Sample description nTPM
Amygdala
nTPM: 1565.1
Samples: 4

Max nTPM: 2285.8
Min nTPM: 1225.1
Sample A Female 2285.8
Sample B Female 1225.1
Sample C Male 1288.2
Sample D Male 1461.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3155.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 3155.8
Samples: 4

Max nTPM: 3349.6
Min nTPM: 3068.7
Sample A Male 3349.6
Sample B Male 3081.5
Sample C Female 3123.5
Sample D Female 3068.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

36.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 36.3
70276861 Antisense, RP_050531_01_D11, Mouse strain C57BL/6J (56 days, male) 36.3

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