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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:2646.1 nTPM
FANTOM5:1160.1 Scaled Tags Per Million
Pig:2735.5 nTPM
Mouse:3048.0 nTPM
Allen mouse:30.1 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2646.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 2017.0
2396 Male, age 61, right hemisphere 2349.2
2032 Female, age 42, unknown 2065.5
2497 Male, age 66, unknown 1636.3
Centromedial thalamic nucleus
nTPM: 1777.2
2401 Male, age 76, right hemisphere 2424.4
2279 Female, age 85, left hemisphere 1130.0
Habenula
nTPM: 1927.8
1957 Male, age 80, both hemispheres 2375.0
2203 Male, age 61, left hemisphere 1904.6
2276 Male, age 66, unknown 1883.4
2252 Male, age 62, unknown 1548.1
Lateral geniculate body
nTPM: 2194.2
2106 Female, age 67, right hemisphere 2838.3
2035 Female, age 72, unknown 2513.7
1953 Male, age 62, unknown 2391.2
2399 Male, age 61, left hemisphere 2373.6
2857 Male, age 74, right hemisphere 2019.4
2575 Female, age 94, right hemisphere 1834.0
2659 Male, age 66, unknown 1824.3
2841 Male, age 80, both hemispheres 1759.5
Lateral thalamic nuclei
nTPM: 1920.5
2765 Female, age 67, both hemispheres 2209.7
2573 Female, age 94, left hemisphere 2173.5
1903 Male, age 76, left hemisphere 1972.8
2577 Male, age 74, both hemispheres 1707.2
2661 Female, age 72, unknown 1539.2
Medial dorsal thalamic nucleus
nTPM: 2053.8
2572 Female, age 94, right hemisphere 3256.4
1859 Male, age 76, both hemispheres 2497.1
1971 Male, age 61, right hemisphere 2357.8
1810 Male, age 48, unknown 2243.1
2026 Male, age 62, unknown 2203.7
2498 Male, age 66, unknown 2194.1
2283 Male, age 80, right hemisphere 1926.1
2492 Male, age 75, right hemisphere 1864.6
2576 Male, age 74, both hemispheres 1776.8
1930 Female, age 42, unknown 1776.5
2402 Female, age 67, both hemispheres 1679.4
2039 Female, age 72, unknown 1594.5
2660 Female, age 72, unknown 1329.3
Medial geniculate body
nTPM: 1873.1
2650 Female, age 94, left hemisphere 2433.7
1811 Female, age 42, unknown 2089.8
2657 Male, age 74, right hemisphere 1988.3
2207 Male, age 80, right hemisphere 1805.7
2571 Male, age 75, right hemisphere 1697.4
2217 Female, age 72, unknown 1620.8
2049 Male, age 76, both hemispheres 1475.8
Nucleus reuniens
nTPM: 1598.1
2212 Female, age 67, left hemisphere 1961.2
2205 Male, age 80, left hemisphere 1619.8
2210 Female, age 85, left hemisphere 1213.4
Nucleus rhomboideus
nTPM: 1524.0
2206 Male, age 80, both hemispheres 2082.9
2213 Female, age 67, left hemisphere 1375.2
2280 Female, age 85, left hemisphere 1114.1
Posterior thalamic nucleus
nTPM: 2646.1
2649 Female, age 94, both hemispheres 3823.3
2266 Male, age 76, right hemisphere 3311.0
2655 Male, age 74, right hemisphere 1790.9
2495 Female, age 67, right hemisphere 1659.2
Pulvinar
nTPM: 2114.7
1972 Male, age 62, unknown 2485.9
2214 Male, age 76, right hemisphere 2458.9
2398 Male, age 61, left hemisphere 2342.3
2724 Male, age 74, right hemisphere 2227.7
1932 Male, age 80, right hemisphere 2209.2
1929 Male, age 48, unknown 1982.2
2499 Male, age 66, unknown 1961.6
1899 Female, age 42, unknown 1940.6
2496 Female, age 67, right hemisphere 1812.7
2582 Female, age 72, unknown 1725.4
Subthalamic nucleus
nTPM: 1773.8
2124 Male, age 62, unknown 2220.5
2282 Male, age 61, both hemispheres 1970.0
2275 Male, age 66, unknown 1940.2
2406 Female, age 72, unknown 1806.8
2658 Male, age 74, both hemispheres 1786.6
2779 Female, age 42, unknown 1718.7
2056 Female, age 72, unknown 1467.5
2216 Male, age 48, unknown 1280.2
Ventral posterolateral thalamic nucleus
nTPM: 1937.4
2740 Male, age 76, right hemisphere 3054.5
2397 Male, age 61, right hemisphere 2192.0
2197 Male, age 80, both hemispheres 1936.8
2570 Male, age 75, right hemisphere 1693.7
2578 Male, age 74, both hemispheres 1632.8
2581 Female, age 72, unknown 1114.9
Ventral posteromedial thalamic nucleus
nTPM: 2002.8
2202 Male, age 61, left hemisphere 2357.3
2127 Male, age 76, right hemisphere 2189.6
2758 Male, age 80, both hemispheres 1946.4
2653 Male, age 74, both hemispheres 1861.3
2281 Male, age 75, right hemisphere 1659.4
Ventral thalamic nuclei
nTPM: 1960.5
1860 Male, age 76, both hemispheres 2933.7
1845 Male, age 48, unknown 2485.3
2285 Male, age 62, unknown 1916.3
1912 Female, age 42, unknown 1867.4
2204 Male, age 80, both hemispheres 1812.4
2580 Male, age 66, unknown 1744.7
2858 Female, age 72, unknown 1711.6
2291 Female, age 72, unknown 1623.1
2652 Male, age 74, left hemisphere 1550.3
Zona incerta
nTPM: 1431.9
2215 Male, age 66, unknown 1686.4
2208 Male, age 80, right hemisphere 1570.1
2822 Male, age 74, right hemisphere 1519.2
2403 Male, age 62, unknown 1204.9
2663 Female, age 72, unknown 1178.9

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1160.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 1160.1
FF:10154-103A1 76 years, female 1160.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2735.5
Pig sample Sample description nTPM
Thalamus
nTPM: 2735.5
Samples: 4

Max nTPM: 3511.3
Min nTPM: 2060.2
Sample A Female 3511.3
Sample B Female 2394.1
Sample C Male 2976.3
Sample D Male 2060.2

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3048.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 3048.0
Samples: 4

Max nTPM: 3298.6
Min nTPM: 2674.8
Sample A Male 2674.8
Sample B Male 3298.6
Sample C Female 3066.2
Sample D Female 3152.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

30.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 30.1
70276861 Antisense, RP_050531_01_D11, Mouse strain C57BL/6J (56 days, male) 30.1

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