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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2314.4 nTPM
GTEx:2314.4 nTPM
FANTOM5:2369.8 Scaled Tags Per Million
Pig:1867.2 nTPM
Mouse:7794.4 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2314.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 2314.4
Samples: 105

Max nTPM: 5430.7
Min nTPM: 457.0
Std nTPM: 969.4
Median nTPM:
218_1 71 years, female 5430.7
322_1 76 years, male 4951.5
452_1 88 years, female 4373.4
386_1 76 years, male 4338.8
317_1 60 years, male 4127.1
379_1 60 years, male 4121.0
6_1 73 years, female 4104.2
173_1 67 years, male 4094.4
353_1 82 years, female 3750.1
375_1 74 years, female 3520.0
321_1 62 years, female 3477.3
2_1 77 years, female 3427.4
4_1 88 years, female 3352.4
295_1 61 years, female 3352.0
41_1 94 years, female 3310.8
377_1 82 years, female 3301.7
145_1 84 years, male 3299.7
351_1 91 years, male 3212.9
17_1 71 years, male 3193.3
384_1 83 years, male 3185.6
318_1 68 years, male 3173.7
506_1 65 years, male 3121.3
354_1 81 years, female 3080.6
316_1 62 years, male 3075.7
447_1 81 years, male 3073.8
307_1 66 years, female 3055.0
350_1 84 years, female 3034.2
163_1 78 years, male 2989.3
35_1 74 years, female 2873.6
319_1 81 years, male 2815.7
320_1 89 years, female 2738.5
308_1 70 years, female 2732.4
348_1 84 years, male 2713.9
291_1 76 years, male 2709.8
237_1 82 years, male 2645.0
347_1 72 years, male 2623.6
349_1 83 years, male 2556.0
177_1 74 years, male 2521.8
243_1 75 years, male 2457.7
264_1 73 years, female 2409.9
376_1 75 years, female 2385.9
18_1 88 years, male 2372.7
311_1 78 years, male 2301.1
404_1 82 years, female 2293.1
139_1 64 years, female 2264.3
356_1 87 years, female 2261.0
335_1 73 years, female 2256.9
288_1 66 years, female 2254.3
389_1 86 years, female 2253.9
518_1 75 years, female 2236.1
425_1 59 years, female 2220.8
352_1 62 years, male 2219.7
189_1 76 years, male 2215.4
172_1 72 years, female 2196.7
293_1 68 years, female 2183.4
394_1 75 years, female 2167.8
314_1 67 years, male 2165.1
526_1 61 years, male 2158.2
120_1 70 years, female 2143.6
137_1 83 years, male 2132.8
396_1 62 years, male 2120.9
292_1 71 years, male 2117.0
503_1 68 years, male 2063.2
517_1 88 years, male 1954.0
405_1 91 years, male 1939.8
495_1 57 years, female 1934.5
109_1 81 years, female 1909.5
153_1 70 years, female 1850.7
117_1 61 years, male 1840.9
286_1 68 years, female 1824.9
251_1 78 years, male 1809.8
115_1 83 years, male 1794.2
254_1 77 years, female 1783.4
42_1 85 years, male 1734.4
246_1 77 years, male 1723.2
355_1 70 years, female 1683.0
265_1 87 years, male 1682.1
468_1 89 years, male 1670.5
119_1 70 years, female 1643.7
126_1 63 years, male 1612.4
406_1 79 years, male 1610.1
324_1 76 years, male 1587.2
315_1 62 years, female 1578.1
480_1 63 years, male 1536.3
43_1 64 years, female 1513.5
99_1 64 years, male 1498.7
313_1 79 years, female 1435.4
266_1 85 years, male 1424.2
142_1 61 years, female 1422.7
499_1 55 years, female 1374.6
229_1 69 years, female 1364.7
217_1 76 years, male 1358.3
9_1 66 years, female 1317.9
501_1 88 years, male 1313.1
81_1 67 years, male 1231.6
162_1 79 years, female 1070.1
89_1 63 years, male 953.6
414_1 84 years, female 886.4
466_1 57 years, female 862.6
32_1 67 years, male 818.8
415_1 77 years, female 807.4
149_1 88 years, male 721.4
490_1 67 years, female 600.7
491_1 89 years, female 569.2
413_1 59 years, female 457.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2369.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 2369.8
FF:10030-101E3 24-65 years, mixed 2369.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1867.2
Pig sample Sample description nTPM
Retina
nTPM: 1867.2
Samples: 4

Max nTPM: 2081.1
Min nTPM: 1609.7
Sample A Female 1747.8
Sample B Female 2081.1
Sample C Male 2030.1
Sample D Male 1609.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7794.4
Mouse sample Sample description nTPM
Retina
nTPM: 7794.4
Samples: 4

Max nTPM: 8821.7
Min nTPM: 7029.4
Sample A Male 8146.0
Sample B Male 7180.5
Sample C Female 8821.7
Sample D Female 7029.4

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