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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2843.2 nTPM
HPA Brain:1953.0 nTPM
GTEx:2843.2 nTPM
FANTOM5:1505.4 Scaled Tags Per Million
Pig:2233.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1953.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1848.0
1981 Female, age 72, midline 2303.9
2565 Male, age 75, midline 1949.0
2194 Female, age 79, both hemispheres 1853.0
2048 Male, age 55, midline 1590.4
2816 Male, age 47, midline 1543.4
Cervical spinal cord, dorsal horn
nTPM: 1892.1
2173 Female, age 72, unknown 2687.8
2296 Male, age 66, both hemispheres 2026.8
2069 Male, age 47, both hemispheres 1970.7
2721 Male, age 90, both hemispheres 1726.9
2297 Male, age 75, both hemispheres 1471.6
1877 Male, age 55, unknown 1468.7
Cervical spinal cord, ventral horn
nTPM: 1953.0
2098 Female, age 72, unknown 2376.8
2809 Male, age 90, both hemispheres 1920.7
2295 Male, age 66, both hemispheres 1904.9
2480 Male, age 75, both hemispheres 1896.6
2068 Male, age 55, unknown 1863.3
2820 Female, age 79, both hemispheres 1755.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2843.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 2843.2
Samples: 159

Max nTPM: 5680.3
Min nTPM: 1686.1
Std nTPM: 597.9
Median nTPM: 2747.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 5680.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 5523.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 4410.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 4117.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 3969.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 3880.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 3875.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 3870.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 3833.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 3750.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 3728.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 3721.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3714.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 3679.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 3678.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 3623.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 3612.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 3583.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 3563.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3496.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 3488.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 3426.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 3407.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 3382.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 3322.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 3311.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 3298.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 3289.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 3273.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 3269.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 3240.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 3238.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 3213.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 3207.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3189.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 3186.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 3186.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 3175.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 3172.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3142.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 3140.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 3124.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 3123.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 3122.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 3094.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 3093.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 3084.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 3055.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 3034.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 3033.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 3024.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 2996.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 2976.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2971.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2962.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 2954.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2952.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2945.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 2943.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2936.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2926.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2912.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 2911.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 2907.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 2905.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2896.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 2883.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 2868.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 2858.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 2855.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 2855.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2806.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2802.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 2795.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2787.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2769.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2767.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 2763.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 2761.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2747.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 2747.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2734.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2730.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 2699.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2696.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2688.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 2687.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2686.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2680.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 2674.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 2670.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 2670.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 2663.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 2650.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 2634.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 2631.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2603.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 2602.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 2600.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2590.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 2589.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 2585.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2582.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 2580.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2578.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 2548.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2547.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 2525.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 2519.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2517.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 2515.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 2511.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2498.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2494.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2491.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2489.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 2484.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 2478.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 2476.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 2476.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2471.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 2465.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2453.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 2433.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2421.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2420.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2408.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 2386.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 2385.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2385.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 2382.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 2362.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 2358.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2358.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 2339.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 2337.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 2329.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 2318.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2308.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 2289.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 2254.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 2241.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2200.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2174.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2171.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 2170.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2143.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 2119.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 2054.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2017.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 2008.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 2004.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1999.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1926.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1894.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1869.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1825.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1765.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 1686.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1505.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1505.4
FF:10159-103A6 76 years, female 1544.1
FF:10181-103D1 60 years, female 1466.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2233.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1993.0
Samples: 4

Max nTPM: 2095.8
Min nTPM: 1772.9
Sample A Female 2095.8
Sample B Female 1772.9
Sample C Male 2009.0
Sample D Male 2094.1
Ventral spinal cord
nTPM: 2233.2
Samples: 4

Max nTPM: 2387.5
Min nTPM: 2059.6
Sample A Female 2100.7
Sample B Female 2387.5
Sample C Male 2384.9
Sample D Male 2059.6

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