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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
346.1
Sample id
Sample description
nTPM
Amygdala nTPM: 281.3
2814
Male, age 76, right hemisphere
441.3
1987
Female, age 91, left hemisphere
288.1
2517
Female, age 94, left hemisphere
280.0
2514
Male, age 75, right hemisphere
202.5
2695
Female, age 67, right hemisphere
194.8
Basal amygdala nTPM: 328.0
2110
Male, age 80, left hemisphere
411.2
2685
Female, age 94, left hemisphere
405.4
2243
Female, age 91, right hemisphere
396.4
1955
Male, age 76, both hemispheres
329.1
2827
Female, age 67, right hemisphere
216.2
2609
Male, age 75, right hemisphere
209.5
Central amygdala nTPM: 346.1
2826
Female, age 94, left hemisphere
423.4
1905
Male, age 76, both hemispheres
414.8
2239
Male, age 80, left hemisphere
365.7
2701
Female, age 91, right hemisphere
289.0
2515
Male, age 75, right hemisphere
237.7
Corticomedial amygdala nTPM: 314.4
2829
Male, age 80, left hemisphere
425.2
2242
Female, age 91, right hemisphere
366.9
2429
Female, age 94, left hemisphere
355.1
2240
Male, age 76, both hemispheres
304.7
2535
Female, age 67, right hemisphere
236.5
2428
Male, age 75, right hemisphere
198.0
Lateral amygdala nTPM: 322.8
1883
Male, age 76, both hemispheres
462.8
2534
Female, age 94, left hemisphere
462.2
2255
Female, age 91, right hemisphere
304.4
2256
Male, age 80, left hemisphere
296.1
2516
Male, age 75, right hemisphere
219.5
2830
Female, age 67, right hemisphere
191.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
217.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 217.1
Samples: 152
Max nTPM: 636.2
Min nTPM: 77.9
Std nTPM: 95.8
Median nTPM: 205.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
636.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
532.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
423.3
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
420.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
420.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
416.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
413.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
399.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
385.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
370.7
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
370.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
357.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
355.6
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
355.2
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
352.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
352.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
351.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
349.9
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
330.6
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
328.6
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
320.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
319.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
319.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
317.4
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
311.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
310.5
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
309.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
308.4
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
305.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
304.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
302.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
301.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
299.1
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
295.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
292.9
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
290.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
289.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
286.3
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
268.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
265.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
263.3
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
261.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
260.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
251.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
248.6
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
246.9
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
241.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
240.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
240.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
232.1
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
231.5
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
230.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
229.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
227.6
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
226.2
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
225.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
222.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
220.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
219.1
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
219.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
218.9
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
218.8
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
217.0
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
215.1
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
214.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
214.0
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
214.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
212.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
212.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
212.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
212.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
209.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
209.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
209.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
209.7
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
207.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
202.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
202.4
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
201.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
200.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
199.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
199.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
199.3
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
198.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
196.4
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
188.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
186.1
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
184.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
183.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
179.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
177.6
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
172.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
170.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
170.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
168.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
167.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
167.0
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
163.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
163.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
162.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
159.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
158.5
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
157.8
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
154.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
152.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
152.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
150.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
149.7
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
149.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
149.5
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
147.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
147.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
143.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
142.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
142.1
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
140.7
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
139.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
139.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
138.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
136.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
134.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
132.9
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
131.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
131.0
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
128.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
128.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
126.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
126.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
125.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
125.3
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
123.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
122.2
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
122.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
117.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
115.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
114.7
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
112.6
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
112.1
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
109.9
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
107.9
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
107.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
107.2
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
102.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
101.3
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
95.8
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
94.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
89.8
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
87.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
82.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
81.0
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
80.6
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
77.9
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
734.3
Mouse sample
Sample description
nTPM
Amygdala nTPM: 734.3
Samples: 4
Max nTPM: 806.8
Min nTPM: 697.3
Sample A
Male
806.8
Sample B
Male
697.3
Sample C
Female
734.2
Sample D
Female
698.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
