MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:192.2 nTPM
HPA Brain:342.9 nTPM
GTEx:192.2 nTPM
FANTOM5:87.8 Scaled Tags Per Million
Pig:488.1 nTPM
Mouse:719.3 nTPM
Allen mouse:24.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 342.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 295.5
2019 Male, age 18, unknown 388.8
1827 Male, age 72, unknown 362.2
2666 Male, age 74, left hemisphere 346.6
2411 Female, age 72, unknown 334.8
2219 Male, age 76, both hemispheres 329.3
2586 Male, age 75, left hemisphere 270.2
2828 Female, age 72, unknown 260.4
1870 Female, age 42, unknown 237.0
1833 Male, age 53, unknown 222.0
1830 Male, age 51, unknown 204.3
Dorsal raphe nucleus
nTPM: 297.4
2298 Female, age 72, unknown 408.1
2047 Male, age 72, unknown 325.3
1828 Male, age 53, unknown 316.8
2750 Male, age 76, both hemispheres 267.2
2016 Female, age 72, unknown 169.8
Inferior colliculus
nTPM: 286.2
2097 Female, age 72, unknown 352.0
1848 Female, age 42, unknown 286.4
1890 Male, age 53, unknown 279.6
2849 Male, age 72, unknown 226.9
Median raphe nucleus
nTPM: 331.5
2220 Male, age 76, midline 331.5
Periaquaductal grey, anterior
nTPM: 302.6
1795 Male, age 51, unknown 327.7
1947 Male, age 18, unknown 302.6
2502 Female, age 75, unknown 277.5
Periaquaductal grey, dorsal
nTPM: 228.2
1831 Male, age 72, unknown 250.2
1840 Male, age 53, unknown 243.2
2464 Female, age 72, unknown 228.6
2850 Male, age 76, both hemispheres 190.9
Periaquaductal grey, lateral
nTPM: 212.3
2272 Male, age 74, both hemispheres 243.0
2053 Male, age 18, unknown 206.0
2140 Male, age 76, both hemispheres 187.8
Pretectal area
nTPM: 342.9
1944 Female, age 72, unknown 499.9
1816 Male, age 51, unknown 489.3
2007 Male, age 72, unknown 485.3
1817 Female, age 42, unknown 451.0
1815 Male, age 53, unknown 344.4
2667 Female, age 75, unknown 325.2
2224 Female, age 72, unknown 299.8
2407 Male, age 75, both hemispheres 228.6
2273 Male, age 74, both hemispheres 217.9
2316 Male, age 76, right hemisphere 216.2
2825 Male, age 18, unknown 214.7
Red nucleus
nTPM: 237.4
2785 Male, age 18, unknown 340.4
1821 Female, age 72, unknown 282.5
2584 Male, age 75, left hemisphere 274.1
2725 Female, age 75, unknown 249.4
1954 Female, age 42, unknown 240.4
2588 Male, age 74, left hemisphere 235.7
2823 Male, age 76, right hemisphere 225.4
1865 Male, age 51, unknown 203.3
1904 Male, age 53, unknown 202.6
2227 Male, age 72, unknown 201.2
2503 Female, age 72, unknown 199.8
2769 Male, age 72, unknown 194.1
Substantia nigra
nTPM: 322.5
1941 Male, age 53, unknown 447.9
1916 Female, age 42, unknown 440.3
1889 Female, age 72, unknown 419.1
1851 Male, age 51, unknown 357.0
2241 Male, age 72, unknown 332.8
2409 Female, age 72, unknown 282.9
2665 Male, age 74, both hemispheres 282.6
2590 Female, age 75, unknown 225.7
2583 Male, age 75, right hemisphere 223.5
2699 Male, age 18, unknown 213.3
Superior colliculus
nTPM: 283.1
2087 Female, age 72, unknown 409.1
2668 Female, age 75, unknown 384.7
1796 Male, age 53, unknown 317.0
2261 Male, age 18, unknown 315.5
1895 Male, age 76, right hemisphere 306.2
1839 Male, age 51, unknown 247.0
2664 Male, age 75, both hemispheres 231.1
1913 Female, age 42, unknown 218.9
2587 Male, age 74, left hemisphere 210.9
1995 Male, age 72, unknown 190.4
Ventral tegmental area
nTPM: 309.3
2218 Male, age 76, both hemispheres 391.5
2410 Female, age 72, unknown 372.8
1915 Female, age 42, unknown 339.8
1942 Male, age 51, unknown 290.7
2223 Female, age 72, unknown 241.8
2021 Male, age 53, unknown 219.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 192.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 192.2
Samples: 139

Max nTPM: 918.8
Min nTPM: 55.5
Std nTPM: 135.5
Median nTPM: 142.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 918.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 714.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 550.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 523.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 477.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 472.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 448.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 433.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 432.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 430.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 414.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 87.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.8
FF:10158-103A5 76 years, female 87.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 488.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 283.0
Samples: 4

Max nTPM: 448.5
Min nTPM: 86.2
Sample A Female 448.5
Sample B Female 204.8
Sample C Male 392.6
Sample D Male 86.2
Midbrain
nTPM: 398.7
Samples: 4

Max nTPM: 720.6
Min nTPM: 123.1
Sample A Female 123.1
Sample B Female 236.3
Sample C Male 720.6
Sample D Male 514.7
Periaqueductal gray
nTPM: 266.5
Samples: 3

Max nTPM: 344.4
Min nTPM: 218.6
Sample B Female 236.6
Sample C Male 344.4
Sample D Male 218.6
Superior colliculi
nTPM: 488.2
Samples: 4

Max nTPM: 698.1
Min nTPM: 311.5
Sample A Female 509.7
Sample B Female 311.5
Sample C Male 698.1
Sample D Male 433.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 719.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 719.3
Samples: 4

Max nTPM: 725.1
Min nTPM: 710.1
Sample A Male 725.1
Sample B Male 710.1
Sample C Female 717.2
Sample D Female 724.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 24.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.8
112197625 Antisense, RP_110421_01_F07, Mouse strain C57BL/6J (56 days, male) 27.4
79360272 Antisense, RP_071018_01_G01, Mouse strain C57BL/6J (56 days, male) 22.1

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