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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:122.9 nTPM
HPA Brain:286.5 nTPM
GTEx:122.9 nTPM
FANTOM5:89.2 Scaled Tags Per Million
Pig:194.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

286.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 239.6
2194 Female, age 79, both hemispheres 309.1
1981 Female, age 72, midline 263.8
2565 Male, age 75, midline 233.6
2816 Male, age 47, midline 196.2
2048 Male, age 55, midline 195.3
Cervical spinal cord, dorsal horn
nTPM: 286.5
2297 Male, age 75, both hemispheres 376.0
2173 Female, age 72, unknown 311.8
2069 Male, age 47, both hemispheres 295.9
1877 Male, age 55, unknown 289.5
2721 Male, age 90, both hemispheres 250.1
2296 Male, age 66, both hemispheres 196.0
Cervical spinal cord, ventral horn
nTPM: 243.8
2068 Male, age 55, unknown 319.9
2820 Female, age 79, both hemispheres 307.9
2480 Male, age 75, both hemispheres 247.6
2295 Male, age 66, both hemispheres 205.3
2098 Female, age 72, unknown 196.9
2809 Male, age 90, both hemispheres 185.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 122.9
Samples: 159

Max nTPM: 540.6
Min nTPM: 55.2
Std nTPM: 63.5
Median nTPM: 104.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 540.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 386.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 375.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 306.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 304.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 256.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 245.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 232.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 230.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 227.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 224.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 223.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 214.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 192.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 189.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 182.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 181.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 179.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 174.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 173.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 173.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 171.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 171.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 166.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 166.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 164.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 163.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 162.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 151.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 150.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 147.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 147.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 146.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 145.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 142.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 141.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 138.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 137.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 137.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 135.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 134.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 134.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 132.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 131.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 130.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 130.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 128.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 126.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 125.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 125.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 123.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 122.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 121.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 121.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 119.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 119.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 118.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 116.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 115.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 115.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 115.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 114.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 114.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 114.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 113.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 112.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 111.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 110.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 110.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 109.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 109.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 109.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 109.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 108.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 108.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 108.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 106.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 105.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 104.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 104.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 102.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 102.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 102.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 102.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 100.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 100.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 100.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 98.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 98.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 98.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 97.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 97.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 96.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 96.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 96.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 96.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 96.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 95.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 95.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 95.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 94.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 94.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 93.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 93.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 93.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 92.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 92.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 92.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 91.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 90.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 90.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 90.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 90.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 89.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 88.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 88.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 88.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 87.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 87.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 86.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 86.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 85.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 85.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 85.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 84.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 84.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 84.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 83.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 82.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 81.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 81.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 81.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 80.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 80.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 80.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 80.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 80.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 79.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 79.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 77.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 77.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 77.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 77.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 76.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 75.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 74.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 73.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 72.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 72.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 68.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 68.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 66.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 66.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 64.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 63.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 62.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 61.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 56.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 55.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

89.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 89.2
FF:10181-103D1 60 years, female 94.0
FF:10159-103A6 76 years, female 84.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 165.4
Samples: 4

Max nTPM: 306.5
Min nTPM: 47.1
Sample A Female 306.5
Sample B Female 90.7
Sample C Male 47.1
Sample D Male 217.3
Ventral spinal cord
nTPM: 194.2
Samples: 4

Max nTPM: 241.1
Min nTPM: 93.5
Sample A Female 215.6
Sample B Female 241.1
Sample C Male 226.5
Sample D Male 93.5

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