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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

122.951
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:214.6 nTPM
HPA Brain:551.6 nTPM
GTEx:214.6 nTPM
FANTOM5:175.4 Scaled Tags Per Million
Pig:505.5 nTPM
Mouse:729.9 nTPM
Allen mouse:25.9 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB000063Antibody CAB073539
Glial cells HighNot detected
Neuronal cells HighMedium




HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB079023
Hippocampal formation mean intensity 122.951
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 82.999
Molecular layer of the dentate gyrus 102.370
Granular dentate gyrus 45.683
CA1 - oriens layer 105.306
CA1 - pyramidal layer 85.124
CA1 - radiatum layer 105.667
CA2 - oriens layer 102.770
CA2 - pyramidal layer 65.875
CA2 - radiatum layer 94.534
CA3 - oriens layer 86.154
CA3 - pyramidal layer 57.581
CA3 - radiatum layer 85.590
Stratum lucidum 67.818
Lacunosum moleculare 78.093
Subiculum 64.611

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

551.6
Sample id Sample description nTPM
Hippocampus
nTPM: 290.8
1898 Male, age 80, left hemisphere 449.5
2621 Female, age 67, right hemisphere 315.3
2148 Female, age 91, left hemisphere 268.3
1855 Male, age 76, left hemisphere 260.2
2529 Female, age 94, left hemisphere 227.7
1911 Female, age 85, right hemisphere 224.1
Dentate gyrus
nTPM: 344.3
1927 Female, age 91, both hemispheres 426.0
2530 Female, age 94, left hemisphere 360.5
2010 Male, age 76, both hemispheres 339.8
2528 Male, age 74, both hemispheres 328.5
2531 Female, age 67, both hemispheres 308.5
2246 Female, age 85, both hemispheres 302.3
Entorhinal gyrus
nTPM: 415.7
2764 Male, age 80, right hemisphere 580.2
2613 Female, age 94, left hemisphere 498.0
1938 Female, age 85, left hemisphere 431.6
1787 Male, age 76, left hemisphere 370.8
2686 Male, age 75, right hemisphere 348.5
2117 Female, age 91, right hemisphere 265.1
Hippocampus, CA1
nTPM: 364.4
2749 Male, age 80, left hemisphere 563.6
2082 Female, age 91, right hemisphere 349.8
1873 Female, age 85, both hemispheres 322.6
2045 Male, age 76, both hemispheres 308.7
2527 Male, age 74, both hemispheres 277.5
Hippocampus, CA2
nTPM: 363.2
1892 Male, age 76, both hemispheres 475.5
1963 Male, age 80, left hemisphere 373.9
2437 Female, age 94, left hemisphere 366.6
1940 Female, age 85, left hemisphere 346.8
2249 Male, age 74, both hemispheres 310.1
2113 Female, age 91, right hemisphere 306.5
Hippocampus, CA3
nTPM: 356.7
2620 Female, age 94, left hemisphere 442.0
2137 Male, age 80, left hemisphere 410.5
1867 Male, age 76, both hemispheres 402.1
2436 Male, age 74, both hemispheres 325.3
1891 Female, age 85, both hemispheres 290.5
2861 Female, age 67, both hemispheres 269.5
Parahippocampal cortex
nTPM: 418.8
1850 Male, age 80, both hemispheres 580.4
1990 Female, age 91, right hemisphere 492.6
2245 Female, age 91, both hemispheres 462.6
2693 Female, age 94, both hemispheres 430.2
1933 Female, age 85, both hemispheres 427.8
2532 Female, age 72, left hemisphere 421.2
2250 Female, age 67, right hemisphere 403.6
2018 Male, age 76, both hemispheres 357.2
2622 Female, age 67, right hemisphere 334.7
2692 Male, age 74, both hemispheres 277.2
Perirhinal gyrus
nTPM: 551.6
1847 Female, age 91, left hemisphere 698.0
1794 Male, age 80, right hemisphere 655.7
1841 Female, age 85, right hemisphere 538.1
2521 Female, age 94, right hemisphere 460.6
2848 Male, age 76, right hemisphere 405.7
Subiculum
nTPM: 308.7
1977 Female, age 85, both hemispheres 431.9
1901 Male, age 80, both hemispheres 357.5
2619 Male, age 74, both hemispheres 304.8
2438 Female, age 94, left hemisphere 295.1
2042 Male, age 76, both hemispheres 235.3
2729 Female, age 91, right hemisphere 227.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 214.6
Samples: 197

Max nTPM: 579.9
Min nTPM: 71.4
Std nTPM: 108.7
Median nTPM: 179.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 579.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 515.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 515.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 504.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 482.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 481.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 479.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 464.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 461.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 447.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 422.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 413.7
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 406.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 398.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 396.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 396.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 393.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 383.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 382.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 375.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 372.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 368.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 367.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 358.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 354.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 349.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 348.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 346.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 344.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 342.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 339.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 328.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 325.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 324.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 320.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 315.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 308.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 305.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 301.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 301.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 300.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 300.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 297.5
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 297.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 294.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 289.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 288.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 280.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 273.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 271.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 271.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 269.6
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 264.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 263.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 262.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 260.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 259.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 257.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 256.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 254.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 253.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 250.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 247.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 245.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 241.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 241.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 240.9
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 238.9
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 238.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 235.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 234.4
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 234.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 233.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 232.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 228.5
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 227.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 225.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 225.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 224.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 218.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 216.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 215.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 213.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 212.5
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 211.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 209.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 209.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 207.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 200.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 199.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 198.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 198.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 198.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 192.5
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 186.6
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 184.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 184.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 182.2
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 179.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 179.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 178.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 175.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 175.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 174.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 172.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 172.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 172.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 171.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 171.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 170.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 170.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 167.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 167.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 165.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 165.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 163.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 163.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 160.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 159.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 159.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 157.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 156.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 156.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 155.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 153.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 152.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 151.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 151.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 149.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 148.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 148.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 146.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 143.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 143.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 142.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 140.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 139.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 137.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 137.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 137.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 136.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 134.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 132.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 132.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 131.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 130.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 130.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 129.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 127.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 123.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 123.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 122.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 121.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 121.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 120.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 119.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 118.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 117.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 115.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 115.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 115.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 114.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 113.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 111.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 110.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 109.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 109.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 108.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 106.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 106.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 104.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 104.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 102.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 101.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 101.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 101.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 101.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 100.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 100.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 99.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 99.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 96.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 94.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 93.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 92.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 91.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 91.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 90.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 89.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 87.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 84.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 84.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 83.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 81.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 78.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 76.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 71.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

175.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 175.4
FF:10169-103B7 60 years, female 198.3
FF:10153-102I9 76 years, female 152.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

505.5
Pig sample Sample description nTPM
Subiculum
nTPM: 408.1
Samples: 4

Max nTPM: 528.8
Min nTPM: 325.5
Sample A Female 528.8
Sample B Female 370.2
Sample C Male 407.8
Sample D Male 325.5
Dorsal hippocampus
nTPM: 469.6
Samples: 4

Max nTPM: 551.6
Min nTPM: 382.0
Sample A Female 551.6
Sample B Female 508.2
Sample C Male 436.5
Sample D Male 382.0
Entorhinal cortex
nTPM: 505.5
Samples: 4

Max nTPM: 562.3
Min nTPM: 431.9
Sample A Female 530.0
Sample B Female 562.3
Sample C Male 497.6
Sample D Male 431.9
Ventral hippocampus
nTPM: 457.6
Samples: 4

Max nTPM: 604.4
Min nTPM: 313.5
Sample A Female 466.1
Sample B Female 313.5
Sample C Male 604.4
Sample D Male 446.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

729.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 683.9
Samples: 4

Max nTPM: 724.4
Min nTPM: 668.2
Sample A Male 669.9
Sample B Male 672.9
Sample C Female 668.2
Sample D Female 724.4
Hippocampal formation
nTPM: 729.9
Samples: 4

Max nTPM: 786.8
Min nTPM: 699.4
Sample A Male 699.4
Sample B Male 705.8
Sample C Female 786.8
Sample D Female 727.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 25.9
112197625 Antisense, RP_110421_01_F07, Mouse strain C57BL/6J (56 days, male) 27.7
79360272 Antisense, RP_071018_01_G01, Mouse strain C57BL/6J (56 days, male) 24.0

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