We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SPARC
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SPARC
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:277.4 nTPM
HPA Brain:1194.5 nTPM
GTEx:277.4 nTPM
FANTOM5:919.2 Scaled Tags Per Million
Pig:945.0 nTPM
Mouse:392.9 nTPM
Allen mouse:4.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1194.5
Sample id Sample description nTPM
Amygdala
nTPM: 1194.5
2695 Female, age 67, right hemisphere 1570.7
1987 Female, age 91, left hemisphere 1436.5
2814 Male, age 76, right hemisphere 1188.3
2514 Male, age 75, right hemisphere 1055.6
2517 Female, age 94, left hemisphere 721.3
Basal amygdala
nTPM: 692.2
2609 Male, age 75, right hemisphere 1014.5
2243 Female, age 91, right hemisphere 855.9
2110 Male, age 80, left hemisphere 758.4
2685 Female, age 94, left hemisphere 596.2
1955 Male, age 76, both hemispheres 556.6
2827 Female, age 67, right hemisphere 371.9
Central amygdala
nTPM: 841.9
2515 Male, age 75, right hemisphere 1342.3
2701 Female, age 91, right hemisphere 971.1
1905 Male, age 76, both hemispheres 735.7
2239 Male, age 80, left hemisphere 714.2
2826 Female, age 94, left hemisphere 446.1
Corticomedial amygdala
nTPM: 799.4
2242 Female, age 91, right hemisphere 1229.4
2829 Male, age 80, left hemisphere 989.2
2428 Male, age 75, right hemisphere 973.8
2429 Female, age 94, left hemisphere 627.3
2240 Male, age 76, both hemispheres 564.3
2535 Female, age 67, right hemisphere 412.0
Lateral amygdala
nTPM: 520.7
2255 Female, age 91, right hemisphere 713.6
2516 Male, age 75, right hemisphere 663.4
1883 Male, age 76, both hemispheres 520.8
2256 Male, age 80, left hemisphere 506.2
2830 Female, age 67, right hemisphere 435.5
2534 Female, age 94, left hemisphere 285.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

277.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 277.4
Samples: 152

Max nTPM: 927.6
Min nTPM: 66.8
Std nTPM: 165.1
Median nTPM: 222.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 927.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 920.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 913.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 871.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 750.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 635.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 624.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 609.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 596.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 558.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 555.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 527.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 495.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 495.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 491.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 484.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 481.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 465.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 448.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 443.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 441.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 428.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 424.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 402.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 393.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 387.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 381.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 379.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 377.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 376.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 376.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 373.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 368.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 366.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 358.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 347.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 341.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 336.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 332.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 331.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 324.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 315.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 314.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 314.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 310.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 305.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 302.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 299.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 298.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 297.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 294.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 293.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 290.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 288.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 286.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 282.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 280.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 274.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 268.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 266.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 263.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 263.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 260.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 257.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 251.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 251.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 250.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 248.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 239.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 238.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 238.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 237.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 236.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 225.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 225.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 223.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 221.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 218.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 217.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 217.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 216.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 216.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 216.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 215.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 213.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 212.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 212.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 210.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 209.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 207.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 207.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 206.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 204.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 204.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 204.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 200.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 197.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 197.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 194.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 194.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 192.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 192.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 190.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 189.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 189.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 182.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 180.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 179.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 176.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 174.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 173.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 172.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 170.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 170.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 169.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 168.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 167.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 166.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 159.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 154.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 154.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 153.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 151.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 145.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 144.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 144.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 143.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 140.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 139.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 138.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 136.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 134.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 133.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 129.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 129.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 128.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 128.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 127.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 127.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 127.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 125.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 120.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 117.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 117.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 111.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 108.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 106.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 97.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 92.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 85.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 75.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 66.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

919.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 919.2
FF:10151-102I7 76 years, female 919.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

945.0
Pig sample Sample description nTPM
Amygdala
nTPM: 945.0
Samples: 4

Max nTPM: 1129.5
Min nTPM: 863.7
Sample A Female 1129.5
Sample B Female 863.7
Sample C Male 868.7
Sample D Male 918.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

392.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 393.0
Samples: 4

Max nTPM: 422.8
Min nTPM: 326.9
Sample A Male 411.2
Sample B Male 326.9
Sample C Female 422.8
Sample D Female 410.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.7
73788443 Antisense, RP_051213_01_B02, Mouse strain C57BL/6J (56 days, male) 5.0
70429441 Antisense, RP_050614_01_F09, Mouse strain C57BL/6J (56 days, male) 4.7
73512200 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 4.5
70918880 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 1.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org