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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:902.2 nTPM
HPA Brain:2093.8 nTPM
GTEx:902.2 nTPM
FANTOM5:3212.8 Scaled Tags Per Million
Pig:1750.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2093.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2093.8
2048 Male, age 55, midline 2378.4
1981 Female, age 72, midline 2350.6
2816 Male, age 47, midline 2278.8
2565 Male, age 75, midline 1817.1
2194 Female, age 79, both hemispheres 1643.8
Cervical spinal cord, dorsal horn
nTPM: 1957.4
2296 Male, age 66, both hemispheres 2587.4
2173 Female, age 72, unknown 2301.8
2721 Male, age 90, both hemispheres 2160.6
1877 Male, age 55, unknown 1773.3
2069 Male, age 47, both hemispheres 1595.6
2297 Male, age 75, both hemispheres 1325.4
Cervical spinal cord, ventral horn
nTPM: 1786.9
2098 Female, age 72, unknown 2371.4
2809 Male, age 90, both hemispheres 2099.5
2068 Male, age 55, unknown 1739.4
2295 Male, age 66, both hemispheres 1535.8
2480 Male, age 75, both hemispheres 1497.6
2820 Female, age 79, both hemispheres 1477.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

902.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 902.2
Samples: 159

Max nTPM: 1998.9
Min nTPM: 295.1
Std nTPM: 341.4
Median nTPM: 885.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1998.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1979.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1874.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1795.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1773.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1580.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1562.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1553.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1518.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1475.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1463.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1443.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1382.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1378.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1373.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1368.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1357.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1314.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1296.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1287.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1282.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1281.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1271.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1244.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1236.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1226.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1219.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1206.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1186.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1180.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1178.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1176.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1173.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 1147.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1140.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1134.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1133.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1132.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1123.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1100.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1093.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1092.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1090.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1072.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1069.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1061.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1051.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1043.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1033.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1023.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1008.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 995.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 991.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 991.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 990.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 985.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 980.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 970.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 967.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 962.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 947.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 942.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 942.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 930.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 929.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 925.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 920.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 919.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 914.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 907.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 904.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 898.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 895.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 893.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 893.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 891.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 891.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 891.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 886.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 885.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 869.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 865.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 860.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 858.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 854.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 849.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 844.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 844.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 837.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 834.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 817.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 816.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 807.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 801.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 790.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 780.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 777.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 775.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 766.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 751.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 745.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 742.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 721.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 716.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 711.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 702.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 702.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 698.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 697.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 697.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 695.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 685.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 684.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 682.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 682.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 677.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 677.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 655.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 654.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 652.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 650.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 646.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 642.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 633.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 622.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 617.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 614.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 609.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 609.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 608.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 604.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 598.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 585.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 580.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 570.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 566.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 564.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 550.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 530.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 522.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 520.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 519.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 515.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 506.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 497.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 450.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 435.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 429.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 427.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 415.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 404.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 403.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 396.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 377.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 377.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 367.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 344.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 320.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 295.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3212.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 3212.8
FF:10159-103A6 76 years, female 4117.6
FF:10181-103D1 60 years, female 2308.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1750.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1750.8
Samples: 4

Max nTPM: 2546.0
Min nTPM: 987.8
Sample A Female 987.8
Sample B Female 1804.4
Sample C Male 2546.0
Sample D Male 1664.8
Ventral spinal cord
nTPM: 1442.8
Samples: 4

Max nTPM: 1715.3
Min nTPM: 1211.2
Sample A Female 1211.2
Sample B Female 1360.4
Sample C Male 1715.3
Sample D Male 1484.3

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