MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:897.9 nTPM
HPA Brain:2636.8 nTPM
GTEx:897.9 nTPM
FANTOM5:2275.6 Scaled Tags Per Million
Pig:1523.7 nTPM
Mouse:1586.9 nTPM
Allen mouse:9.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 2636.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1708.1
2828 Female, age 72, unknown 2644.4
1870 Female, age 42, unknown 2161.5
1827 Male, age 72, unknown 1891.3
2411 Female, age 72, unknown 1741.0
1833 Male, age 53, unknown 1708.7
2666 Male, age 74, left hemisphere 1700.3
1830 Male, age 51, unknown 1616.7
2586 Male, age 75, left hemisphere 1530.3
2219 Male, age 76, both hemispheres 1498.9
2019 Male, age 18, unknown 588.2
Dorsal raphe nucleus
nTPM: 2369.7
2016 Female, age 72, unknown 2880.2
2298 Female, age 72, unknown 2462.4
2047 Male, age 72, unknown 2437.7
1828 Male, age 53, unknown 2297.8
2750 Male, age 76, both hemispheres 1770.3
Inferior colliculus
nTPM: 1686.5
2849 Male, age 72, unknown 2320.2
2097 Female, age 72, unknown 1746.8
1890 Male, age 53, unknown 1654.5
1848 Female, age 42, unknown 1024.5
Median raphe nucleus
nTPM: 2145.3
2220 Male, age 76, midline 2145.3
Periaquaductal grey, anterior
nTPM: 2279.1
1795 Male, age 51, unknown 2704.5
1947 Male, age 18, unknown 2343.6
2502 Female, age 75, unknown 1789.2
Periaquaductal grey, dorsal
nTPM: 2203.7
1840 Male, age 53, unknown 2492.1
2850 Male, age 76, both hemispheres 2485.5
2464 Female, age 72, unknown 2255.1
1831 Male, age 72, unknown 1581.9
Periaquaductal grey, lateral
nTPM: 2636.8
2053 Male, age 18, unknown 3646.6
2140 Male, age 76, both hemispheres 2189.6
2272 Male, age 74, both hemispheres 2074.0
Pretectal area
nTPM: 1668.7
2825 Male, age 18, unknown 3340.3
2224 Female, age 72, unknown 2721.3
2407 Male, age 75, both hemispheres 2263.0
2667 Female, age 75, unknown 2195.7
2273 Male, age 74, both hemispheres 2112.3
2316 Male, age 76, right hemisphere 1264.8
1944 Female, age 72, unknown 1170.6
1815 Male, age 53, unknown 1024.8
1817 Female, age 42, unknown 835.3
1816 Male, age 51, unknown 786.0
2007 Male, age 72, unknown 641.7
Red nucleus
nTPM: 1815.7
2769 Male, age 72, unknown 2538.7
2227 Male, age 72, unknown 2487.8
2503 Female, age 72, unknown 2332.2
2725 Female, age 75, unknown 2066.7
1821 Female, age 72, unknown 1977.5
1865 Male, age 51, unknown 1971.4
1954 Female, age 42, unknown 1908.5
1904 Male, age 53, unknown 1628.0
2584 Male, age 75, left hemisphere 1580.4
2588 Male, age 74, left hemisphere 1381.3
2823 Male, age 76, right hemisphere 1326.8
2785 Male, age 18, unknown 588.9
Substantia nigra
nTPM: 2032.8
2699 Male, age 18, unknown 4091.3
1916 Female, age 42, unknown 2663.0
1851 Male, age 51, unknown 2289.4
2665 Male, age 74, both hemispheres 2164.2
2590 Female, age 75, unknown 1710.1
1941 Male, age 53, unknown 1681.5
2409 Female, age 72, unknown 1595.0
2583 Male, age 75, right hemisphere 1515.2
2241 Male, age 72, unknown 1403.9
1889 Female, age 72, unknown 1214.8
Superior colliculus
nTPM: 1313.4
1796 Male, age 53, unknown 1677.4
1913 Female, age 42, unknown 1586.7
2587 Male, age 74, left hemisphere 1482.1
1995 Male, age 72, unknown 1433.4
1839 Male, age 51, unknown 1396.5
2261 Male, age 18, unknown 1388.0
2664 Male, age 75, both hemispheres 1271.3
2087 Female, age 72, unknown 1144.5
2668 Female, age 75, unknown 985.0
1895 Male, age 76, right hemisphere 769.4
Ventral tegmental area
nTPM: 2117.4
1915 Female, age 42, unknown 2445.9
2021 Male, age 53, unknown 2234.6
1942 Male, age 51, unknown 2148.2
2218 Male, age 76, both hemispheres 1988.9
2410 Female, age 72, unknown 1980.8
2223 Female, age 72, unknown 1906.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 897.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 897.9
Samples: 139

Max nTPM: 2725.6
Min nTPM: 131.7
Std nTPM: 422.6
Median nTPM: 789.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 2725.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2332.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 2179.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1995.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1929.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1737.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1667.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1659.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 1627.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1602.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1594.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2275.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2275.6
FF:10158-103A5 76 years, female 2275.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1523.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1523.7
Samples: 4

Max nTPM: 1846.1
Min nTPM: 1324.4
Sample A Female 1324.4
Sample B Female 1508.5
Sample C Male 1415.9
Sample D Male 1846.1
Midbrain
nTPM: 926.9
Samples: 4

Max nTPM: 1242.9
Min nTPM: 770.2
Sample A Female 770.2
Sample B Female 1242.9
Sample C Male 858.0
Sample D Male 836.6
Periaqueductal gray
nTPM: 997.4
Samples: 3

Max nTPM: 1189.7
Min nTPM: 827.8
Sample B Female 974.6
Sample C Male 1189.7
Sample D Male 827.8
Superior colliculi
nTPM: 947.5
Samples: 4

Max nTPM: 1288.0
Min nTPM: 795.9
Sample A Female 1288.0
Sample B Female 795.9
Sample C Male 804.3
Sample D Male 901.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1586.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 1586.9
Samples: 4

Max nTPM: 1662.3
Min nTPM: 1488.7
Sample A Male 1662.3
Sample B Male 1488.7
Sample C Female 1546.2
Sample D Female 1650.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
73788443 Antisense, RP_051213_01_B02, Mouse strain C57BL/6J (56 days, male) 10.0
73512200 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 8.9
70429441 Antisense, RP_050614_01_F09, Mouse strain C57BL/6J (56 days, male) 8.8
70918880 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 3.3

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