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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:2168.0 nTPM
FANTOM5:1234.1 Scaled Tags Per Million
Pig:1269.6 nTPM
Mouse:1457.5 nTPM
Allen mouse:8.1 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2168.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 1072.1
2497 Male, age 66, unknown 1303.7
2396 Male, age 61, right hemisphere 1172.1
2032 Female, age 42, unknown 740.6
Centromedial thalamic nucleus
nTPM: 581.9
2401 Male, age 76, right hemisphere 614.0
2279 Female, age 85, left hemisphere 549.8
Habenula
nTPM: 1723.9
2276 Male, age 66, unknown 2099.3
2252 Male, age 62, unknown 1777.6
1957 Male, age 80, both hemispheres 1655.1
2203 Male, age 61, left hemisphere 1363.8
Lateral geniculate body
nTPM: 1044.9
2857 Male, age 74, right hemisphere 1868.5
2841 Male, age 80, both hemispheres 1551.1
2575 Female, age 94, right hemisphere 1172.9
2659 Male, age 66, unknown 865.3
2399 Male, age 61, left hemisphere 792.3
2106 Female, age 67, right hemisphere 775.1
2035 Female, age 72, unknown 753.7
1953 Male, age 62, unknown 580.1
Lateral thalamic nuclei
nTPM: 1263.7
2573 Female, age 94, left hemisphere 1570.9
2765 Female, age 67, both hemispheres 1447.1
1903 Male, age 76, left hemisphere 1365.1
2661 Female, age 72, unknown 1002.5
2577 Male, age 74, both hemispheres 932.8
Medial dorsal thalamic nucleus
nTPM: 1610.9
2039 Female, age 72, unknown 2447.3
2572 Female, age 94, right hemisphere 2336.9
2492 Male, age 75, right hemisphere 2266.6
2498 Male, age 66, unknown 1950.2
2576 Male, age 74, both hemispheres 1741.1
2026 Male, age 62, unknown 1597.4
1810 Male, age 48, unknown 1534.8
2402 Female, age 67, both hemispheres 1469.7
2283 Male, age 80, right hemisphere 1319.5
1930 Female, age 42, unknown 1252.2
1971 Male, age 61, right hemisphere 1178.6
1859 Male, age 76, both hemispheres 1024.0
2660 Female, age 72, unknown 823.6
Medial geniculate body
nTPM: 1809.7
2650 Female, age 94, left hemisphere 2185.0
2049 Male, age 76, both hemispheres 2129.7
2207 Male, age 80, right hemisphere 2099.3
2217 Female, age 72, unknown 2046.0
2571 Male, age 75, right hemisphere 1672.1
2657 Male, age 74, right hemisphere 1631.4
1811 Female, age 42, unknown 904.5
Nucleus reuniens
nTPM: 2168.0
2212 Female, age 67, left hemisphere 3057.3
2205 Male, age 80, left hemisphere 2524.4
2210 Female, age 85, left hemisphere 922.3
Nucleus rhomboideus
nTPM: 1585.8
2206 Male, age 80, both hemispheres 2305.7
2213 Female, age 67, left hemisphere 1537.5
2280 Female, age 85, left hemisphere 914.3
Posterior thalamic nucleus
nTPM: 2061.3
2649 Female, age 94, both hemispheres 3817.2
2655 Male, age 74, right hemisphere 2063.1
2495 Female, age 67, right hemisphere 1594.4
2266 Male, age 76, right hemisphere 770.4
Pulvinar
nTPM: 1107.7
2724 Male, age 74, right hemisphere 1378.9
1932 Male, age 80, right hemisphere 1346.4
2499 Male, age 66, unknown 1298.7
2582 Female, age 72, unknown 1237.1
2496 Female, age 67, right hemisphere 1125.3
2214 Male, age 76, right hemisphere 1108.7
1929 Male, age 48, unknown 1098.3
1972 Male, age 62, unknown 1088.5
2398 Male, age 61, left hemisphere 719.6
1899 Female, age 42, unknown 675.4
Subthalamic nucleus
nTPM: 1897.4
2282 Male, age 61, both hemispheres 2414.8
2779 Female, age 42, unknown 2403.0
2216 Male, age 48, unknown 2389.3
2124 Male, age 62, unknown 2000.0
2406 Female, age 72, unknown 1931.4
2056 Female, age 72, unknown 1688.7
2275 Male, age 66, unknown 1685.6
2658 Male, age 74, both hemispheres 666.5
Ventral posterolateral thalamic nucleus
nTPM: 1072.1
2197 Male, age 80, both hemispheres 1899.5
2570 Male, age 75, right hemisphere 1462.0
2578 Male, age 74, both hemispheres 930.9
2397 Male, age 61, right hemisphere 927.0
2740 Male, age 76, right hemisphere 719.7
2581 Female, age 72, unknown 493.8
Ventral posteromedial thalamic nucleus
nTPM: 1324.9
2758 Male, age 80, both hemispheres 2037.8
2127 Male, age 76, right hemisphere 1607.3
2281 Male, age 75, right hemisphere 1432.2
2202 Male, age 61, left hemisphere 775.3
2653 Male, age 74, both hemispheres 771.9
Ventral thalamic nuclei
nTPM: 1271.0
2204 Male, age 80, both hemispheres 2387.8
2291 Female, age 72, unknown 1824.4
2285 Male, age 62, unknown 1348.9
1912 Female, age 42, unknown 1272.4
1860 Male, age 76, both hemispheres 1101.6
2580 Male, age 66, unknown 966.3
1845 Male, age 48, unknown 872.8
2652 Male, age 74, left hemisphere 854.4
2858 Female, age 72, unknown 810.3
Zona incerta
nTPM: 1286.7
2208 Male, age 80, right hemisphere 2050.0
2403 Male, age 62, unknown 1580.7
2663 Female, age 72, unknown 1140.3
2215 Male, age 66, unknown 1046.9
2822 Male, age 74, right hemisphere 615.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1234.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 1234.1
FF:10154-103A1 76 years, female 1234.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1269.6
Pig sample Sample description nTPM
Thalamus
nTPM: 1269.6
Samples: 4

Max nTPM: 1701.9
Min nTPM: 883.0
Sample A Female 1701.9
Sample B Female 883.0
Sample C Male 1197.2
Sample D Male 1296.3

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1457.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 1457.5
Samples: 4

Max nTPM: 1561.8
Min nTPM: 1289.6
Sample A Male 1289.6
Sample B Male 1552.6
Sample C Female 1425.9
Sample D Female 1561.8

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 8.1
73788443 Antisense, RP_051213_01_B02, Mouse strain C57BL/6J (56 days, male) 8.3
73512200 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 8.1
70429441 Antisense, RP_050614_01_F09, Mouse strain C57BL/6J (56 days, male) 8.0
70918880 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 3.2

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