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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:2846.1 nTPM
FANTOM5:2119.8 Scaled Tags Per Million
Pig:1110.5 nTPM
Allen mouse:7.6 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2846.1
Sample id Sample description nTPM
Area postrema
nTPM: 1884.2
2799 Male, age 61, both hemispheres 2833.0
2054 Male, age 76, both hemispheres 1600.5
2306 Male, age 80, both hemispheres 1219.2
Dorsal medullary reticular nucleus
nTPM: 1544.2
2373 Male, age 61, both hemispheres 1845.4
2040 Female, age 85, both hemispheres 1770.6
2088 Male, age 76, both hemispheres 1016.7
Dorsal motor vagal complex
nTPM: 1299.6
2000 Male, age 74, unknown 1694.3
2813 Female, age 72, unknown 1549.8
2797 Male, age 61, both hemispheres 1455.9
2844 Male, age 55, unknown 1363.5
2133 Female, age 91, both hemispheres 1359.0
2643 Male, age 74, both hemispheres 1173.0
2807 Female, age 85, both hemispheres 1061.2
2185 Male, age 76, both hemispheres 740.1
Gigantocellular reticular nuclei, medullary
nTPM: 1385.8
2314 Male, age 61, both hemispheres 2496.0
1876 Female, age 85, both hemispheres 1571.3
2387 Female, age 91, both hemispheres 1406.6
2462 Male, age 74, both hemispheres 1151.6
2310 Male, age 80, both hemispheres 1126.7
2022 Male, age 76, right hemisphere 562.4
Gigantocellular reticular nuclei, pars
nTPM: 1454.3
2084 Female, age 85, both hemispheres 1952.5
2336 Male, age 61, both hemispheres 1775.4
2330 Male, age 80, both hemispheres 1313.9
2706 Male, age 80, both hemispheres 1278.4
2168 Male, age 76, both hemispheres 951.4
Inferior olive
nTPM: 2846.1
2085 Female, age 85, both hemispheres 3527.4
2563 Male, age 74, both hemispheres 2961.8
2379 Male, age 80, both hemispheres 2643.5
2628 Female, age 91, both hemispheres 2555.8
2178 Male, age 61, both hemispheres 2542.0
Lateral medullary reticular nucleus
nTPM: 2225.1
2374 Male, age 61, both hemispheres 2961.7
2804 Female, age 91, both hemispheres 2374.8
2190 Female, age 85, both hemispheres 2278.1
2305 Male, age 74, both hemispheres 2082.8
2852 Male, age 80, both hemispheres 1995.6
2044 Male, age 76, both hemispheres 1657.3
Medial olivary nucleus
nTPM: 2236.1
2138 Female, age 91, both hemispheres 2647.5
1943 Male, age 61, both hemispheres 2505.2
2851 Male, age 80, both hemispheres 1949.5
1962 Male, age 76, both hemispheres 1842.3
Medial vestibular nucleus
nTPM: 2021.0
2801 Male, age 74, both hemispheres 2454.9
2743 Female, age 85, both hemispheres 2383.0
2624 Male, age 61, both hemispheres 2237.0
2134 Male, age 76, both hemispheres 1907.2
2093 Male, age 80, both hemispheres 1589.3
2803 Female, age 91, both hemispheres 1554.5
Motor hypoglossal nucleus
nTPM: 1572.5
2461 Male, age 61, both hemispheres 1876.1
2125 Female, age 91, both hemispheres 1676.6
2277 Male, age 76, both hemispheres 1574.8
2182 Male, age 80, both hemispheres 1549.9
2132 Female, age 85, both hemispheres 1185.0
Nucleus ambiguus
nTPM: 2008.0
2071 Male, age 76, both hemispheres 2386.1
2096 Female, age 85, both hemispheres 1629.9
Nucleus cuneatus
nTPM: 1075.1
2808 Female, age 85, both hemispheres 1665.0
2376 Male, age 61, both hemispheres 1472.3
2562 Male, age 61, both hemispheres 1267.6
2380 Male, age 80, both hemispheres 1258.8
2564 Male, age 74, both hemispheres 1090.6
2381 Male, age 80, both hemispheres 1007.0
2100 Male, age 76, both hemispheres 679.7
2805 Female, age 91, both hemispheres 617.8
2131 Male, age 76, both hemispheres 617.5
Nucleus gracilis
nTPM: 1236.6
2627 Male, age 74, both hemispheres 1905.0
2382 Male, age 80, both hemispheres 991.4
2299 Female, age 85, both hemispheres 813.5
Nucleus raphe obscurus
nTPM: 2175.8
2845 Female, age 85, midline 2464.1
2142 Male, age 76, midline 2147.2
2800 Male, age 61, midline 1916.1
Nucleus raphe pallidus
nTPM: 1871.6
1924 Male, age 61, midline 2187.5
2183 Male, age 80, midline 1857.0
2145 Male, age 76, midline 1570.4
Nucleus tractus solitarii
nTPM: 1393.8
2144 Female, age 91, right hemisphere 1737.0
2191 Female, age 85, both hemispheres 1709.9
2307 Male, age 80, both hemispheres 1203.6
2656 Male, age 76, both hemispheres 924.6
Parvicellular reticular nuclei
nTPM: 1270.9
2119 Male, age 80, both hemispheres 1753.3
2095 Male, age 76, both hemispheres 1461.9
2558 Male, age 74, both hemispheres 597.6
Parvicellular reticular nuclei, medullary
nTPM: 1318.9
2189 Female, age 91, both hemispheres 1626.0
2091 Female, age 85, both hemispheres 1172.2
2181 Male, age 80, left hemisphere 1158.4
Peritrigeminal nucleus
nTPM: 2237.8
2067 Female, age 85, both hemispheres 2445.3
2179 Male, age 61, both hemispheres 2134.4
2136 Male, age 76, both hemispheres 2133.7
Prepositus hypoglossal nucleus
nTPM: 2271.9
2855 Female, age 85, right hemisphere 2462.6
2086 Male, age 80, both hemispheres 2081.1
Spinal trigeminal nucleus, caudal
nTPM: 1298.4
2642 Male, age 74, both hemispheres 1598.4
2312 Male, age 61, both hemispheres 1545.9
2308 Male, age 80, both hemispheres 1303.7
2390 Female, age 91, both hemispheres 1248.3
2447 Male, age 76, both hemispheres 795.6
Spinal trigeminal nucleus, interpolar
nTPM: 1347.5
2625 Male, age 61, both hemispheres 1632.9
2066 Male, age 76, right hemisphere 1425.4
2033 Male, age 80, both hemispheres 1397.8
2389 Female, age 91, both hemispheres 1380.8
2386 Female, age 85, both hemispheres 900.5
Spinal vestibular nucleus
nTPM: 1695.8
2806 Female, age 85, both hemispheres 2118.4
2748 Male, age 76, both hemispheres 1769.7
2780 Male, age 80, both hemispheres 1720.4
2796 Male, age 61, both hemispheres 1640.7
2186 Female, age 91, both hemispheres 1518.3
2384 Male, age 74, both hemispheres 1406.9
Superior vestibular nucleus
nTPM: 2594.2
2061 Male, age 76, both hemispheres 2984.1
2383 Male, age 74, both hemispheres 2756.6
2015 Male, age 80, both hemispheres 2041.9
Ventral medullary reticular nucleus
nTPM: 1827.8
2372 Male, age 61, both hemispheres 2321.0
2060 Male, age 76, both hemispheres 1334.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1864.8
2180 Male, age 61, both hemispheres 2109.9
2302 Female, age 91, both hemispheres 2083.0
2741 Female, age 85, both hemispheres 1811.5
1986 Male, age 76, both hemispheres 1800.7
2118 Male, age 80, both hemispheres 1518.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2119.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 2119.8
FF:10038-101F2 18-64 years, mixed 2732.0
FF:10155-103A2 76 years, female 2348.5
FF:10174-103C3 60 years, female 1278.8

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1110.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 1110.5
Samples: 4

Max nTPM: 1180.2
Min nTPM: 937.1
Sample A Female 937.1
Sample B Female 1171.0
Sample C Male 1153.8
Sample D Male 1180.2

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 7.6
73788443 Antisense, RP_051213_01_B02, Mouse strain C57BL/6J (56 days, male) 8.5
73512200 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 7.2
70429441 Antisense, RP_050614_01_F09, Mouse strain C57BL/6J (56 days, male) 7.1
70918880 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 2.6

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