PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:2846.1 nTPM
FANTOM5:2563.9 Scaled Tags Per Million
Pig:1110.5 nTPM
Mouse:1729.5 nTPM
Allen mouse:8.2 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 2846.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1437.7
2301 Female, age 85, both hemispheres 2474.6
2090 Male, age 80, both hemispheres 1257.4
2188 Female, age 91, both hemispheres 1087.5
1984 Male, age 76, both hemispheres 931.5
Area postrema
nTPM: 1884.2
2799 Male, age 61, both hemispheres 2833.0
2054 Male, age 76, both hemispheres 1600.5
2306 Male, age 80, both hemispheres 1219.2
Dorsal cochlear nucleus
nTPM: 1443.7
2187 Female, age 91, both hemispheres 2014.7
2802 Male, age 74, right hemisphere 1515.7
2370 Male, age 61, both hemispheres 1427.8
2378 Male, age 80, both hemispheres 1215.8
2058 Male, age 76, both hemispheres 1044.5
Dorsal medullary reticular nucleus
nTPM: 1544.2
2373 Male, age 61, both hemispheres 1845.4
2040 Female, age 85, both hemispheres 1770.6
2088 Male, age 76, both hemispheres 1016.7
Dorsal motor vagal complex
nTPM: 1299.6
2000 Male, age 74, unknown 1694.3
2813 Female, age 72, unknown 1549.8
2797 Male, age 61, both hemispheres 1455.9
2844 Male, age 55, unknown 1363.5
2133 Female, age 91, both hemispheres 1359.0
2643 Male, age 74, both hemispheres 1173.0
2807 Female, age 85, both hemispheres 1061.2
2185 Male, age 76, both hemispheres 740.1
Dorsal tegmental nucleus
nTPM: 2140.2
2083 Male, age 80, both hemispheres 2302.6
1936 Male, age 76, left hemisphere 2202.4
2326 Male, age 74, both hemispheres 2037.4
2358 Male, age 61, both hemispheres 2018.2
Dorsolateral tegmental area
nTPM: 1836.7
2360 Male, age 74, both hemispheres 2047.5
2654 Male, age 80, both hemispheres 2002.0
2141 Male, age 76, both hemispheres 1968.4
2337 Male, age 61, both hemispheres 1588.2
2751 Female, age 85, both hemispheres 1577.2
Gigantocellular reticular nuclei, medullary
nTPM: 1385.8
2314 Male, age 61, both hemispheres 2496.0
1876 Female, age 85, both hemispheres 1571.3
2387 Female, age 91, both hemispheres 1406.6
2462 Male, age 74, both hemispheres 1151.6
2310 Male, age 80, both hemispheres 1126.7
2022 Male, age 76, right hemisphere 562.4
Gigantocellular reticular nuclei, pars
nTPM: 1454.3
2084 Female, age 85, both hemispheres 1952.5
2336 Male, age 61, both hemispheres 1775.4
2330 Male, age 80, both hemispheres 1313.9
2706 Male, age 80, both hemispheres 1278.4
2168 Male, age 76, both hemispheres 951.4
Inferior olive
nTPM: 2846.1
2085 Female, age 85, both hemispheres 3527.4
2563 Male, age 74, both hemispheres 2961.8
2379 Male, age 80, both hemispheres 2643.5
2628 Female, age 91, both hemispheres 2555.8
2178 Male, age 61, both hemispheres 2542.0
Kolliker-Fuse nucleus
nTPM: 2251.4
2315 Male, age 76, right hemisphere 4044.7
2163 Male, age 80, both hemispheres 1745.3
2793 Female, age 91, left hemisphere 964.2
Lateral lemniscal nuclei
nTPM: 854.4
2746 Female, age 85, left hemisphere 1174.7
2169 Male, age 76, both hemispheres 932.1
2320 Female, age 91, left hemisphere 763.1
2036 Male, age 80, both hemispheres 721.4
2453 Male, age 74, right hemisphere 680.8
Lateral medullary reticular nucleus
nTPM: 2225.1
2374 Male, age 61, both hemispheres 2961.7
2804 Female, age 91, both hemispheres 2374.8
2190 Female, age 85, both hemispheres 2278.1
2305 Male, age 74, both hemispheres 2082.8
2852 Male, age 80, both hemispheres 1995.6
2044 Male, age 76, both hemispheres 1657.3
Lateral parabrachial nucleus
nTPM: 1797.7
2792 Male, age 76, both hemispheres 2438.3
2139 Female, age 85, right hemisphere 1731.3
2013 Male, age 80, both hemispheres 1594.2
2790 Male, age 61, both hemispheres 1426.9
Lateral vestibular nucleus
nTPM: 2011.9
2311 Male, age 80, both hemispheres 2389.3
2184 Male, age 76, both hemispheres 1634.5
Locus coeruleus
nTPM: 1916.4
2317 Female, age 72, unknown 2240.8
2123 Female, age 91, both hemispheres 2126.1
2162 Male, age 80, both hemispheres 2064.7
1980 Male, age 76, both hemispheres 2007.0
2720 Male, age 74, both hemispheres 1838.5
2014 Male, age 55, unknown 1623.5
2788 Male, age 74, unknown 1514.6
Medial olivary nucleus
nTPM: 2236.1
2138 Female, age 91, both hemispheres 2647.5
1943 Male, age 61, both hemispheres 2505.2
2851 Male, age 80, both hemispheres 1949.5
1962 Male, age 76, both hemispheres 1842.3
Medial parabrachial nucleus
nTPM: 1780.6
2170 Female, age 91, both hemispheres 1940.3
2156 Male, age 61, both hemispheres 1913.4
2786 Male, age 76, both hemispheres 1846.1
2854 Male, age 80, both hemispheres 1689.0
2463 Female, age 85, right hemisphere 1513.9
Medial periolivary nuclei
nTPM: 1055.1
2791 Male, age 74, right hemisphere 1283.3
2063 Male, age 76, both hemispheres 1087.5
2458 Female, age 91, both hemispheres 1008.7
2081 Male, age 80, both hemispheres 962.0
2171 Female, age 85, both hemispheres 934.2
Medial vestibular nucleus
nTPM: 2021.0
2801 Male, age 74, both hemispheres 2454.9
2743 Female, age 85, both hemispheres 2383.0
2624 Male, age 61, both hemispheres 2237.0
2134 Male, age 76, both hemispheres 1907.2
2093 Male, age 80, both hemispheres 1589.3
2803 Female, age 91, both hemispheres 1554.5
Motor facial nucleus
nTPM: 1236.0
2126 Male, age 61, both hemispheres 1511.3
2795 Female, age 91, both hemispheres 1419.6
2697 Female, age 85, both hemispheres 1287.4
2365 Male, age 74, right hemisphere 1193.5
2062 Male, age 76, both hemispheres 1162.1
2327 Male, age 80, both hemispheres 842.1
Motor hypoglossal nucleus
nTPM: 1572.5
2461 Male, age 61, both hemispheres 1876.1
2125 Female, age 91, both hemispheres 1676.6
2277 Male, age 76, both hemispheres 1574.8
2182 Male, age 80, both hemispheres 1549.9
2132 Female, age 85, both hemispheres 1185.0
Motor trigeminal nucleus
nTPM: 1224.1
2335 Male, age 61, both hemispheres 1609.4
2309 Male, age 76, both hemispheres 1599.1
2321 Female, age 91, both hemispheres 1198.1
2560 Male, age 74, both hemispheres 923.4
2079 Male, age 80, both hemispheres 790.4
Nuclei of the trapezoid body
nTPM: 1168.5
2368 Female, age 91, both hemispheres 1303.0
1983 Male, age 76, both hemispheres 1287.1
2166 Male, age 80, both hemispheres 1149.9
2159 Male, age 61, both hemispheres 1128.8
2735 Female, age 85, both hemispheres 973.4
Nucleus ambiguus
nTPM: 2008.0
2071 Male, age 76, both hemispheres 2386.1
2096 Female, age 85, both hemispheres 1629.9
Nucleus cuneatus
nTPM: 1075.1
2808 Female, age 85, both hemispheres 1665.0
2376 Male, age 61, both hemispheres 1472.3
2562 Male, age 61, both hemispheres 1267.6
2380 Male, age 80, both hemispheres 1258.8
2564 Male, age 74, both hemispheres 1090.6
2381 Male, age 80, both hemispheres 1007.0
2100 Male, age 76, both hemispheres 679.7
2805 Female, age 91, both hemispheres 617.8
2131 Male, age 76, both hemispheres 617.5
Nucleus gracilis
nTPM: 1236.6
2627 Male, age 74, both hemispheres 1905.0
2382 Male, age 80, both hemispheres 991.4
2299 Female, age 85, both hemispheres 813.5
Nucleus raphe magnus
nTPM: 992.6
2328 Male, age 80, both hemispheres 1144.8
2455 Male, age 74, both hemispheres 1094.0
2160 Male, age 61, both hemispheres 1069.3
2051 Male, age 76, both hemispheres 1046.2
2459 Female, age 91, both hemispheres 807.0
2172 Female, age 85, both hemispheres 794.3
Nucleus raphe obscurus
nTPM: 2175.8
2845 Female, age 85, midline 2464.1
2142 Male, age 76, midline 2147.2
2800 Male, age 61, midline 1916.1
Nucleus raphe pallidus
nTPM: 1871.6
1924 Male, age 61, midline 2187.5
2183 Male, age 80, midline 1857.0
2145 Male, age 76, midline 1570.4
Nucleus tractus solitarii
nTPM: 1393.8
2144 Female, age 91, right hemisphere 1737.0
2191 Female, age 85, both hemispheres 1709.9
2307 Male, age 80, both hemispheres 1203.6
2656 Male, age 76, both hemispheres 924.6
Paramedian reticular nucleus
nTPM: 1444.3
2057 Male, age 80, both hemispheres 1746.2
2313 Male, age 61, both hemispheres 1451.6
2052 Male, age 76, both hemispheres 1322.9
2050 Female, age 85, both hemispheres 1256.6
Parvicellular reticular nuclei
nTPM: 1270.9
2119 Male, age 80, both hemispheres 1753.3
2095 Male, age 76, both hemispheres 1461.9
2558 Male, age 74, both hemispheres 597.6
Parvicellular reticular nuclei, medullary
nTPM: 1318.9
2189 Female, age 91, both hemispheres 1626.0
2091 Female, age 85, both hemispheres 1172.2
2181 Male, age 80, left hemisphere 1158.4
Pedunculopontine tegmental nucleus
nTPM: 2063.2
2334 Male, age 80, both hemispheres 2335.1
1921 Female, age 85, both hemispheres 2200.6
2338 Male, age 61, both hemispheres 1654.0
Peritrigeminal nucleus
nTPM: 2237.8
2067 Female, age 85, both hemispheres 2445.3
2179 Male, age 61, both hemispheres 2134.4
2136 Male, age 76, both hemispheres 2133.7
Pontine nuclei
nTPM: 899.7
2115 Male, age 80, left hemisphere 1129.3
2109 Female, age 72, unknown 979.9
1968 Male, age 76, left hemisphere 922.4
1863 Male, age 55, unknown 891.8
2787 Female, age 85, both hemispheres 862.8
2319 Female, age 91, both hemispheres 846.9
2727 Male, age 61, right hemisphere 829.3
2454 Male, age 74, left hemisphere 735.4
Pontine raphe nucleus
nTPM: 1641.1
2853 Male, age 76, midline 2175.2
2122 Female, age 85, midline 1107.0
Posteroventral cochlear nucleus
nTPM: 1324.2
2752 Female, age 85, both hemispheres 1737.1
2371 Male, age 61, both hemispheres 1589.3
2070 Male, age 76, both hemispheres 1218.0
2341 Male, age 80, both hemispheres 1140.8
2135 Female, age 91, both hemispheres 936.0
Prepositus hypoglossal nucleus
nTPM: 2271.9
2855 Female, age 85, right hemisphere 2462.6
2086 Male, age 80, both hemispheres 2081.1
Principal sensory trigeminal nucleus
nTPM: 1265.2
2324 Male, age 76, both hemispheres 2083.0
2158 Male, age 61, both hemispheres 1265.5
2008 Male, age 80, left hemisphere 907.0
2367 Female, age 91, left hemisphere 805.3
Reticular pontine nucleus, caudal
nTPM: 969.3
2092 Male, age 76, both hemispheres 1301.8
2559 Male, age 74, both hemispheres 957.1
2457 Female, age 91, both hemispheres 855.0
2332 Male, age 80, right hemisphere 763.4
Reticular pontine nucleus, oral
nTPM: 1336.4
1939 Male, age 80, both hemispheres 1928.4
2167 Male, age 76, both hemispheres 1833.1
2012 Female, age 85, both hemispheres 1207.8
2366 Female, age 91, both hemispheres 864.3
2361 Male, age 74, both hemispheres 848.6
Reticulotegmental nucleus
nTPM: 1466.2
2322 Female, age 91, both hemispheres 1684.5
2333 Male, age 80, both hemispheres 1577.8
2325 Male, age 76, both hemispheres 1461.6
2452 Male, age 74, both hemispheres 1141.0
Spinal trigeminal nucleus, caudal
nTPM: 1298.4
2642 Male, age 74, both hemispheres 1598.4
2312 Male, age 61, both hemispheres 1545.9
2308 Male, age 80, both hemispheres 1303.7
2390 Female, age 91, both hemispheres 1248.3
2447 Male, age 76, both hemispheres 795.6
Spinal trigeminal nucleus, interpolar
nTPM: 1347.5
2625 Male, age 61, both hemispheres 1632.9
2066 Male, age 76, right hemisphere 1425.4
2033 Male, age 80, both hemispheres 1397.8
2389 Female, age 91, both hemispheres 1380.8
2386 Female, age 85, both hemispheres 900.5
Spinal trigeminal nucleus, oral
nTPM: 1202.6
2737 Female, age 85, both hemispheres 1367.6
2164 Male, age 80, both hemispheres 1278.7
1978 Male, age 76, both hemispheres 961.5
Spinal vestibular nucleus
nTPM: 1695.8
2806 Female, age 85, both hemispheres 2118.4
2748 Male, age 76, both hemispheres 1769.7
2780 Male, age 80, both hemispheres 1720.4
2796 Male, age 61, both hemispheres 1640.7
2186 Female, age 91, both hemispheres 1518.3
2384 Male, age 74, both hemispheres 1406.9
Subcoeruleus area
nTPM: 1584.6
2323 Female, age 91, left hemisphere 1882.6
2451 Male, age 74, both hemispheres 1757.6
1958 Male, age 80, both hemispheres 1602.2
2369 Female, age 85, left hemisphere 1578.3
2089 Male, age 76, left hemisphere 1102.2
Superior olive
nTPM: 1086.7
2364 Male, age 74, right hemisphere 1391.6
2561 Female, age 91, both hemispheres 1071.6
2020 Male, age 76, both hemispheres 1007.2
2329 Male, age 80, right hemisphere 1001.9
1875 Female, age 85, both hemispheres 961.2
Superior vestibular nucleus
nTPM: 2594.2
2061 Male, age 76, both hemispheres 2984.1
2383 Male, age 74, both hemispheres 2756.6
2015 Male, age 80, both hemispheres 2041.9
Ventral medullary reticular nucleus
nTPM: 1827.8
2372 Male, age 61, both hemispheres 2321.0
2060 Male, age 76, both hemispheres 1334.7
Ventral periolivary nuclei
nTPM: 1048.7
2130 Female, age 85, both hemispheres 1215.9
2165 Male, age 80, both hemispheres 1141.8
2023 Male, age 76, both hemispheres 957.8
2794 Female, age 91, left hemisphere 879.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1864.8
2180 Male, age 61, both hemispheres 2109.9
2302 Female, age 91, both hemispheres 2083.0
2741 Female, age 85, both hemispheres 1811.5
1986 Male, age 76, both hemispheres 1800.7
2118 Male, age 80, both hemispheres 1518.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1296.2
2359 Male, age 61, both hemispheres 1880.7
2840 Female, age 85, both hemispheres 1473.2
2456 Female, age 91, both hemispheres 1188.8
1959 Male, age 76, both hemispheres 1140.9
2161 Male, age 80, both hemispheres 1123.1
2449 Male, age 74, both hemispheres 970.6

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2563.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 2563.9
FF:10165-103B3 76 years, female 2893.9
FF:10182-103D2 60 years, female 2234.0
Medulla oblongata
Scaled Tags Per Million: 2119.8
FF:10038-101F2 18-64 years, mixed 2732.0
FF:10155-103A2 76 years, female 2348.5
FF:10174-103C3 60 years, female 1278.8
Pons
Scaled Tags Per Million: 1430.2
FF:10033-101E6 18-54 years, mixed 1430.2

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 1110.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 1110.5
Samples: 4

Max nTPM: 1180.2
Min nTPM: 937.1
Sample A Female 937.1
Sample B Female 1171.0
Sample C Male 1153.8
Sample D Male 1180.2
Pons
nTPM: 1050.7
Samples: 4

Max nTPM: 1251.8
Min nTPM: 819.0
Sample A Female 1039.9
Sample B Female 819.0
Sample C Male 1091.9
Sample D Male 1251.8

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 1729.5
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 1729.5
Samples: 4

Max nTPM: 1931.8
Min nTPM: 1522.8
Sample A Male 1651.7
Sample B Male 1522.8
Sample C Female 1931.8
Sample D Female 1811.8

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 8.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 7.6
73788443 Antisense, RP_051213_01_B02, Mouse strain C57BL/6J (56 days, male) 8.5
73512200 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 7.2
70429441 Antisense, RP_050614_01_F09, Mouse strain C57BL/6J (56 days, male) 7.1
70918880 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 2.6
Pons
Expression energy: 8.2
73788443 Antisense, RP_051213_01_B02, Mouse strain C57BL/6J (56 days, male) 9.7
73512200 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 7.9
70429441 Antisense, RP_050614_01_F09, Mouse strain C57BL/6J (56 days, male) 7.1
70918880 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 3.3

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