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TISSUE PRIMARY DATA BASAL GANGLIA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:49.2 nTPM
HPA Brain:84.8 nTPM
GTEx:49.2 nTPM
FANTOM5:39.2 Scaled Tags Per Million
Pig:2.8 nTPM
Mouse:5.5 nTPM
Allen mouse:0.8 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA036348Antibody HPA036349Antibody CAB002422Antibody CAB005258
Glial cells LowNot detectedNot detectedLow
Neuronal cells MediumMediumNot detectedNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.7
2481 Female, age 94, left hemisphere 69.6
2289 Male, age 61, right hemisphere 63.7
1854 Male, age 80, left hemisphere 53.0
1781 Male, age 74, unknown 39.4
2290 Female, age 72, unknown 39.1
1857 Female, age 85, left hemisphere 31.0
2846 Female, age 79, unknown 28.6
2288 Male, age 75, left hemisphere 24.8
Globus pallidus, externus
nTPM: 84.8
1996 Male, age 80, right hemisphere 109.1
2646 Male, age 61, right hemisphere 105.5
2567 Female, age 72, unknown 86.3
2772 Female, age 79, unknown 79.0
2395 Male, age 75, both hemispheres 44.3
Globus pallidus, internus
nTPM: 77.0
1818 Male, age 74, unknown 93.3
2566 Female, age 72, unknown 92.9
2037 Male, age 80, right hemisphere 92.2
2111 Female, age 85, right hemisphere 77.4
2778 Female, age 91, both hemispheres 69.8
2483 Female, age 94, right hemisphere 64.1
2287 Male, age 75, right hemisphere 49.1
Nucleus accumbens
nTPM: 39.3
2732 Male, age 80, right hemisphere 67.3
2391 Female, age 94, left hemisphere 51.7
2698 Female, age 72, unknown 42.7
1806 Female, age 85, left hemisphere 33.5
1856 Female, age 91, right hemisphere 32.4
1783 Male, age 74, unknown 31.4
2824 Male, age 61, right hemisphere 29.0
2286 Male, age 75, left hemisphere 26.1
Nucleus basalis of Meynert
nTPM: 57.0
2569 Male, age 61, both hemispheres 108.1
2393 Male, age 80, right hemisphere 56.8
2484 Female, age 94, left hemisphere 35.5
2821 Male, age 75, both hemispheres 27.6
Nucleus of the diagonal band
nTPM: 41.8
1979 Male, age 74, unknown 64.6
1812 Female, age 91, both hemispheres 42.7
2775 Male, age 80, right hemisphere 39.4
2029 Male, age 61, right hemisphere 32.1
2195 Female, age 85, both hemispheres 30.0
Putamen
nTPM: 45.1
2489 Female, age 72, unknown 61.1
1829 Male, age 74, unknown 55.0
2482 Female, age 94, left hemisphere 52.4
1838 Male, age 80, right hemisphere 39.5
1937 Female, age 91, right hemisphere 39.3
2647 Male, age 75, left hemisphere 37.4
2466 Female, age 79, unknown 30.8
Septal nuclei
nTPM: 52.3
2199 Male, age 80, right hemisphere 94.1
2629 Female, age 94, right hemisphere 60.6
2059 Female, age 85, both hemispheres 60.1
2394 Male, age 61, left hemisphere 57.0
2009 Female, age 91, both hemispheres 45.7
2031 Female, age 72, unknown 25.5
1960 Male, age 74, unknown 22.8
Stria terminalis, bed nucleus
nTPM: 42.6
2201 Male, age 74, unknown 57.7
1974 Female, age 91, both hemispheres 40.4
2486 Female, age 94, both hemispheres 29.7

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 49.2
Samples: 246

Max nTPM: 341.7
Min nTPM: 0.7
Std nTPM: 41.2
Median nTPM: 37.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 341.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 244.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 230.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 170.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 165.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 150.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 146.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 140.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 136.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 134.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 132.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 120.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 119.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 118.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 117.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 117.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 115.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 113.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 109.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 106.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 101.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 100.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 99.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 93.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 92.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 91.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 90.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 89.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 89.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 86.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 86.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 85.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 84.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 84.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 83.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 83.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 79.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 79.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 79.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 77.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 77.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 77.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 76.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 76.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 75.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 73.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 73.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 72.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 72.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 71.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 70.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 70.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 70.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 70.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 69.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 68.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 67.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 67.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 67.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 66.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 65.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 65.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 65.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 63.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 63.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 63.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 62.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 61.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 61.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 61.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 60.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 59.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 59.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 59.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 58.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 57.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 57.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 56.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 55.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 54.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 54.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 52.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 50.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 50.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 50.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 50.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 49.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 49.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 48.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 48.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 48.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 48.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 47.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 47.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 47.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 47.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 47.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 47.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 46.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 46.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 46.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 45.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 45.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 45.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 45.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 44.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 44.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 44.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 43.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 43.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 42.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 42.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 41.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 41.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 40.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 39.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 39.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 38.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 38.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 38.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 37.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 37.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 37.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 37.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 37.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 35.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 35.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 34.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 34.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 33.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 33.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 33.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 33.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 33.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 33.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 33.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 32.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 32.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 32.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 32.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 31.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 31.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 31.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 30.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 30.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 30.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 30.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 30.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 29.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 29.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 29.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 29.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 29.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 29.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 29.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 29.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 28.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 28.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 28.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 27.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 27.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 26.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 26.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 26.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 26.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 26.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 25.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 25.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 25.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 25.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 25.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 24.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 24.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 24.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 23.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 23.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 23.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 23.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 23.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 23.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 23.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 23.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 23.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 22.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 22.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 22.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 22.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 22.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 21.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 21.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 21.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 21.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 21.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 21.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 20.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 20.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 20.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 20.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 19.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 19.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 19.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 19.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 19.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 18.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 18.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 18.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 18.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 18.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 17.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 17.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 17.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 16.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 16.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 16.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 16.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 16.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 16.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 14.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 14.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 14.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 14.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 14.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 13.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 13.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 13.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 12.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 12.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 12.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 12.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 12.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 11.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 11.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 11.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 10.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 10.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 10.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 10.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 10.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 10.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 9.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 9.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 9.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 6.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 5.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 3.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 0.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.2
Samples: 246

Max nTPM: 244.2
Min nTPM: 3.4
Std nTPM: 35.9
Median nTPM: 24.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 244.2
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 204.0
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 192.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 190.2
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 171.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 150.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 132.7
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 131.8
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 131.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 114.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 110.3
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 101.2
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 100.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 99.9
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 92.3
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 91.8
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 88.6
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 87.8
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 85.8
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 84.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 83.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 83.4
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 81.1
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 79.0
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 75.5
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 74.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 74.7
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 73.5
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 73.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 72.9
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 72.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 71.6
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 71.4
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 70.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 68.6
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 68.3
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 66.9
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 65.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 64.9
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 63.9
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 63.9
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 63.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 60.8
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 59.9
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 59.0
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 58.5
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 57.1
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 56.5
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 56.0
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 55.7
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 55.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 54.4
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 54.0
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 53.3
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 53.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 51.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 51.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 49.4
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 48.0
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 48.0
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 47.6
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 46.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 44.3
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 44.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 43.8
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 43.5
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 42.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 42.7
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 42.5
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 41.1
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 41.0
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 40.7
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 40.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 40.1
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 40.1
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 40.0
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 39.8
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 39.7
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 39.4
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 39.0
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 38.7
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 38.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 38.4
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 37.9
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 37.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 37.2
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 36.3
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 35.9
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 35.3
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 35.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 35.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 34.9
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 34.7
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 34.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 34.1
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 34.1
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 33.8
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 32.9
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 32.3
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 31.2
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 31.1
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 30.7
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 30.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 30.2
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 30.2
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 29.5
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 28.2
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 28.2
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 28.1
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 27.9
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 27.3
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 27.1
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 26.9
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 26.0
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 25.2
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 24.8
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 24.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 24.8
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 24.5
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 24.4
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 24.3
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 24.1
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 24.0
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 24.0
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 23.9
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 23.7
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 23.6
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 23.5
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 23.5
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 23.4
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 23.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 23.1
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 23.1
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 23.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 22.8
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 22.6
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 22.0
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 21.9
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 21.7
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 21.5
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 21.4
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 21.1
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 21.1
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 21.1
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 21.0
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 20.8
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 20.7
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 20.0
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 19.8
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 19.8
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 19.7
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 19.5
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 19.4
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 18.9
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 18.9
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 18.7
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 18.3
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 18.2
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 18.2
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 18.1
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 18.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 17.8
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 17.2
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 16.9
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 16.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 16.6
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 16.5
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 16.4
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 16.3
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 16.2
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 16.2
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 16.2
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 15.7
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 15.4
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 15.4
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 15.2
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 15.1
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 14.5
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 14.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 14.5
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 14.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 14.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 14.1
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 14.1
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 14.0
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 13.8
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 13.7
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 13.6
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 13.6
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 13.5
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 13.4
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 13.4
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 13.2
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 13.2
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 13.1
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 12.9
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 12.9
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 12.8
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 12.7
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 12.4
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 12.4
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 11.9
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 11.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 11.8
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 11.6
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 11.6
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 11.6
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 11.5
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 11.3
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 11.0
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 10.9
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 10.8
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 10.8
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 10.7
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 10.6
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 10.5
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 10.5
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 10.4
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 10.1
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 10.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 10.0
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 9.9
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 9.9
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 9.6
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 9.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 9.4
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 9.3
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 9.1
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 8.9
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 8.9
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 8.7
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 8.5
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 8.4
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 8.2
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 7.9
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 7.8
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 7.3
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 7.3
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 7.1
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 6.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 6.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 6.2
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 6.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 5.6
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 3.9
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 3.4
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Brain - Putamen (basal ganglia)
Average nTPM: 47.7
Samples: 205

Max nTPM: 297.2
Min nTPM: 4.2
Std nTPM: 44.9
Median nTPM: 33.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 297.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 291.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 239.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 198.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 185.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 182.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 166.8
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 158.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 145.4
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 144.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 137.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 121.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 115.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 108.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 106.0
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 104.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 103.1
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 102.7
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 100.4
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 98.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 91.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 85.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 83.5
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 83.3
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 83.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 80.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 79.7
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 78.9
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 77.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 77.6
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 76.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 76.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 73.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 72.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 72.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 72.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 70.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 70.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 68.2
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 67.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 66.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 66.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 65.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 64.8
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 64.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 64.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 64.1
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 61.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 60.2
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 59.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 59.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 59.3
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 58.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 58.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 57.9
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 57.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 57.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 56.6
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 55.1
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 54.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 54.1
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 53.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 53.7
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 52.9
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 52.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 51.9
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 51.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 51.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 51.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 51.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 50.8
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 50.8
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 50.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 49.0
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 48.2
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 47.8
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 47.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 46.8
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 46.7
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 44.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 44.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 44.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 43.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 43.6
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 42.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 42.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 41.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 39.5
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 39.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 39.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 38.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 38.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 38.5
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 38.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 38.1
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 37.0
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 36.7
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 36.2
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 36.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 35.0
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 34.7
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 34.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 33.9
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 33.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 33.5
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 33.4
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 32.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 32.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 32.5
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 32.3
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 32.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 32.0
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 32.0
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 31.9
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 31.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 31.6
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 31.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 31.0
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 30.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 29.2
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 29.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 29.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 29.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 29.0
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 28.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 28.6
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 27.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 27.4
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 26.3
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 25.9
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 25.8
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 25.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 25.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 25.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 24.8
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 24.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 24.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 23.8
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 23.5
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 23.4
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 22.7
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 21.9
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 21.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 21.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 21.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 21.5
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 20.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 20.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 20.0
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 20.0
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 19.7
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 19.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 19.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 18.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 18.8
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 18.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 18.5
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 18.5
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 18.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 17.9
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 17.8
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 17.2
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 17.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 16.8
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 16.0
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 15.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 15.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 15.3
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 15.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 15.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 15.1
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 14.6
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 14.5
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 14.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 14.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 14.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 13.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 13.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 13.5
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 13.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 12.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 12.4
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 12.4
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 12.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 12.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 11.2
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 11.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 10.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 10.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 10.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 10.1
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 9.9
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 9.8
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 9.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 9.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 8.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 8.1
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 8.0
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 7.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 7.7
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 6.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 6.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 5.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 5.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 4.2
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

39.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 38.8
FF:10164-103B2 76 years, female 38.8
Nucleus accumbens
Scaled Tags Per Million: 19.8
FF:10037-101F1 23-56 years, mixed 19.8
Putamen
Scaled Tags Per Million: 18.2
FF:10176-103C5 60 years, female 18.2
Globus pallidus
Scaled Tags Per Million: 39.2
FF:10161-103A8 76 years, female 40.9
FF:10175-103C4 60 years, female 37.6

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2.8
Pig sample Sample description nTPM
Caudate
nTPM: 2.8
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.1
Sample A Female 3.3
Sample B Female 2.1
Sample C Male 3.0
Sample D Male 2.7
Putamen
nTPM: 1.1
Samples: 4

Max nTPM: 2.6
Min nTPM: 0.3
Sample A Female 2.6
Sample B Female 0.3
Sample C Male 0.4
Sample D Male 0.9
Septum
nTPM: 2.8
Samples: 4

Max nTPM: 4.4
Min nTPM: 1.3
Sample A Female 1.6
Sample B Female 1.3
Sample C Male 4.4
Sample D Male 3.7
Ventral pallidum
nTPM: 1.9
Samples: 4

Max nTPM: 3.9
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 1.7
Sample C Male 3.9
Sample D Male 1.8

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.5
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.4
Sample A Male 6.2
Sample B Male 6.2
Sample C Female 5.1
Sample D Female 4.4
Septum
nTPM: 4.8
Samples: 4

Max nTPM: 6.1
Min nTPM: 3.4
Sample A Male 3.4
Sample B Male 4.4
Sample C Female 5.4
Sample D Female 6.1
Ventral forebrain
nTPM: 3.4
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.8
Sample A Male 3.6
Sample B Male 2.8
Sample C Female 3.3
Sample D Female 3.7

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
73514695 Antisense, RP_051121_02_H07, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.7
73514695 Antisense, RP_051121_02_H07, Mouse strain C57BL/6J (56 days, male) 0.7

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