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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:546.4 nTPM
HPA Brain:399.3 nTPM
GTEx:546.4 nTPM
FANTOM5:1054.9 Scaled Tags Per Million
Pig:594.5 nTPM
Mouse:1217.1 nTPM
Allen mouse:10.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

399.3
Sample id Sample description nTPM
Amygdala
nTPM: 395.6
2814 Male, age 76, right hemisphere 490.7
2514 Male, age 75, right hemisphere 429.1
1987 Female, age 91, left hemisphere 390.3
2695 Female, age 67, right hemisphere 366.0
2517 Female, age 94, left hemisphere 302.0
Basal amygdala
nTPM: 308.8
2609 Male, age 75, right hemisphere 417.5
2110 Male, age 80, left hemisphere 356.3
2243 Female, age 91, right hemisphere 349.1
1955 Male, age 76, both hemispheres 311.2
2685 Female, age 94, left hemisphere 235.3
2827 Female, age 67, right hemisphere 183.7
Central amygdala
nTPM: 399.3
2515 Male, age 75, right hemisphere 575.5
2701 Female, age 91, right hemisphere 411.4
1905 Male, age 76, both hemispheres 393.2
2239 Male, age 80, left hemisphere 379.3
2826 Female, age 94, left hemisphere 237.0
Corticomedial amygdala
nTPM: 338.2
2428 Male, age 75, right hemisphere 479.5
2829 Male, age 80, left hemisphere 375.2
2242 Female, age 91, right hemisphere 372.8
2429 Female, age 94, left hemisphere 340.8
2240 Male, age 76, both hemispheres 289.9
2535 Female, age 67, right hemisphere 171.1
Lateral amygdala
nTPM: 319.9
2516 Male, age 75, right hemisphere 414.4
1883 Male, age 76, both hemispheres 366.1
2255 Female, age 91, right hemisphere 337.6
2256 Male, age 80, left hemisphere 332.9
2830 Female, age 67, right hemisphere 260.0
2534 Female, age 94, left hemisphere 208.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

546.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 546.4
Samples: 152

Max nTPM: 1927.8
Min nTPM: 157.6
Std nTPM: 253.6
Median nTPM: 509.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1927.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1348.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1292.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1194.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1150.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1089.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1074.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 988.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 968.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 960.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 948.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 925.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 834.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 833.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 826.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 821.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 818.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 813.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 812.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 807.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 800.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 788.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 774.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 772.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 756.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 749.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 718.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 717.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 716.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 712.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 707.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 689.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 688.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 685.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 684.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 683.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 680.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 678.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 677.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 672.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 655.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 652.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 647.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 644.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 637.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 628.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 627.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 625.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 622.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 618.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 616.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 609.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 570.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 568.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 566.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 565.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 562.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 558.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 557.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 545.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 542.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 540.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 537.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 537.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 536.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 535.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 533.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 532.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 528.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 524.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 522.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 518.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 518.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 516.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 512.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 511.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 507.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 507.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 506.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 505.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 501.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 495.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 492.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 485.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 484.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 482.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 476.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 474.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 472.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 469.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 469.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 463.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 454.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 450.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 449.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 448.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 441.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 439.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 429.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 418.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 411.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 406.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 406.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 406.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 402.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 401.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 397.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 396.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 390.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 388.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 383.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 383.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 377.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 376.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 373.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 362.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 361.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 360.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 357.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 354.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 348.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 337.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 334.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 322.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 321.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 317.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 314.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 309.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 304.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 297.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 292.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 292.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 289.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 282.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 282.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 278.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 276.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 272.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 269.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 263.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 259.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 244.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 243.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 241.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 236.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 227.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 227.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 222.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 219.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 216.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 208.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 157.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1054.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1054.9
FF:10151-102I7 76 years, female 1054.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

594.5
Pig sample Sample description nTPM
Amygdala
nTPM: 594.5
Samples: 4

Max nTPM: 691.4
Min nTPM: 525.3
Sample A Female 525.3
Sample B Female 691.4
Sample C Male 622.8
Sample D Male 538.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1217.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1217.1
Samples: 4

Max nTPM: 1577.2
Min nTPM: 923.4
Sample A Male 923.4
Sample B Male 1126.5
Sample C Female 1577.2
Sample D Female 1241.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.8
67978757 Antisense, RP_040923_01_G08, Mouse strain C57BL/6J (56 days, male) 15.2
74047918 Antisense, RP_051214_02_D03, Mouse strain C57BL/6J (56 days, male) 11.9
74988768 Antisense, RP_060315_05_H12, Mouse strain C57BL/6J (56 days, male) 8.3
70919872 Antisense, RP_050713_02_C01, Mouse strain C57BL/6J (56 days, male) 7.6

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