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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:674.0 nTPM
FANTOM5:685.9 Scaled Tags Per Million
Pig:1540.8 nTPM
Mouse:1266.0 nTPM
Allen mouse:13.5 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

674.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 674.0
2396 Male, age 61, right hemisphere 1102.3
2497 Male, age 66, unknown 470.4
2032 Female, age 42, unknown 449.4
Centromedial thalamic nucleus
nTPM: 390.5
2279 Female, age 85, left hemisphere 401.3
2401 Male, age 76, right hemisphere 379.7
Habenula
nTPM: 472.3
2276 Male, age 66, unknown 615.1
2203 Male, age 61, left hemisphere 470.2
1957 Male, age 80, both hemispheres 405.7
2252 Male, age 62, unknown 398.0
Lateral geniculate body
nTPM: 429.4
2841 Male, age 80, both hemispheres 507.4
2857 Male, age 74, right hemisphere 501.5
2035 Female, age 72, unknown 473.8
2659 Male, age 66, unknown 454.8
2399 Male, age 61, left hemisphere 417.1
2575 Female, age 94, right hemisphere 416.2
1953 Male, age 62, unknown 389.2
2106 Female, age 67, right hemisphere 275.2
Lateral thalamic nuclei
nTPM: 431.1
2661 Female, age 72, unknown 609.2
2573 Female, age 94, left hemisphere 480.4
1903 Male, age 76, left hemisphere 388.9
2577 Male, age 74, both hemispheres 351.4
2765 Female, age 67, both hemispheres 325.5
Medial dorsal thalamic nucleus
nTPM: 437.7
2498 Male, age 66, unknown 571.2
2402 Female, age 67, both hemispheres 539.5
1971 Male, age 61, right hemisphere 507.6
2572 Female, age 94, right hemisphere 500.0
2660 Female, age 72, unknown 485.7
2576 Male, age 74, both hemispheres 451.3
2026 Male, age 62, unknown 430.7
2283 Male, age 80, right hemisphere 392.7
1810 Male, age 48, unknown 387.8
1859 Male, age 76, both hemispheres 385.4
1930 Female, age 42, unknown 385.1
2492 Male, age 75, right hemisphere 353.2
2039 Female, age 72, unknown 299.5
Medial geniculate body
nTPM: 450.3
2657 Male, age 74, right hemisphere 586.9
2571 Male, age 75, right hemisphere 550.6
2049 Male, age 76, both hemispheres 450.7
2650 Female, age 94, left hemisphere 445.0
2217 Female, age 72, unknown 440.9
2207 Male, age 80, right hemisphere 386.2
1811 Female, age 42, unknown 291.4
Nucleus reuniens
nTPM: 369.8
2205 Male, age 80, left hemisphere 472.9
2210 Female, age 85, left hemisphere 409.9
2212 Female, age 67, left hemisphere 226.5
Nucleus rhomboideus
nTPM: 309.9
2280 Female, age 85, left hemisphere 371.6
2206 Male, age 80, both hemispheres 350.4
2213 Female, age 67, left hemisphere 207.7
Posterior thalamic nucleus
nTPM: 492.6
2655 Male, age 74, right hemisphere 567.8
2495 Female, age 67, right hemisphere 484.1
2649 Female, age 94, both hemispheres 479.8
2266 Male, age 76, right hemisphere 438.7
Pulvinar
nTPM: 472.2
2724 Male, age 74, right hemisphere 645.6
1899 Female, age 42, unknown 551.5
2499 Male, age 66, unknown 534.9
2582 Female, age 72, unknown 500.1
2398 Male, age 61, left hemisphere 475.2
1932 Male, age 80, right hemisphere 462.4
2214 Male, age 76, right hemisphere 428.9
1929 Male, age 48, unknown 408.0
1972 Male, age 62, unknown 363.0
2496 Female, age 67, right hemisphere 352.1
Subthalamic nucleus
nTPM: 422.0
2282 Male, age 61, both hemispheres 533.0
2056 Female, age 72, unknown 481.2
2658 Male, age 74, both hemispheres 438.2
2216 Male, age 48, unknown 433.5
2124 Male, age 62, unknown 418.8
2779 Female, age 42, unknown 370.1
2406 Female, age 72, unknown 365.1
2275 Male, age 66, unknown 336.1
Ventral posterolateral thalamic nucleus
nTPM: 397.1
2581 Female, age 72, unknown 487.6
2397 Male, age 61, right hemisphere 446.8
2197 Male, age 80, both hemispheres 415.8
2570 Male, age 75, right hemisphere 369.1
2740 Male, age 76, right hemisphere 331.9
2578 Male, age 74, both hemispheres 331.6
Ventral posteromedial thalamic nucleus
nTPM: 401.2
2127 Male, age 76, right hemisphere 500.2
2202 Male, age 61, left hemisphere 405.2
2758 Male, age 80, both hemispheres 403.0
2653 Male, age 74, both hemispheres 375.5
2281 Male, age 75, right hemisphere 322.1
Ventral thalamic nuclei
nTPM: 448.2
2858 Female, age 72, unknown 596.5
1845 Male, age 48, unknown 539.7
1860 Male, age 76, both hemispheres 463.9
2580 Male, age 66, unknown 461.2
2291 Female, age 72, unknown 427.6
2285 Male, age 62, unknown 404.3
2204 Male, age 80, both hemispheres 392.5
1912 Female, age 42, unknown 383.5
2652 Male, age 74, left hemisphere 364.8
Zona incerta
nTPM: 362.7
2403 Male, age 62, unknown 463.9
2208 Male, age 80, right hemisphere 402.9
2822 Male, age 74, right hemisphere 346.9
2215 Male, age 66, unknown 337.1
2663 Female, age 72, unknown 262.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

685.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 685.9
FF:10154-103A1 76 years, female 685.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1540.8
Pig sample Sample description nTPM
Thalamus
nTPM: 1540.8
Samples: 4

Max nTPM: 2048.1
Min nTPM: 1059.2
Sample A Female 1059.2
Sample B Female 1577.1
Sample C Male 1478.7
Sample D Male 2048.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1266.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 1266.0
Samples: 4

Max nTPM: 1485.7
Min nTPM: 1050.0
Sample A Male 1050.0
Sample B Male 1247.4
Sample C Female 1485.7
Sample D Female 1280.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.5
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 13.5
67978757 Antisense, RP_040923_01_G08, Mouse strain C57BL/6J (56 days, male) 16.3
74047918 Antisense, RP_051214_02_D03, Mouse strain C57BL/6J (56 days, male) 14.8
74988768 Antisense, RP_060315_05_H12, Mouse strain C57BL/6J (56 days, male) 12.5
70919872 Antisense, RP_050713_02_C01, Mouse strain C57BL/6J (56 days, male) 10.6

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