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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:257.4 nTPM
GTEx:498.4 nTPM
FANTOM5:1010.6 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001401Antibody CAB008670
Glial cells MediumHigh
Neuronal cells MediumMedium





HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.4
Sample id Sample description nTPM
Hippocampus
nTPM: 257.4
1898 Male, age 80, left hemisphere 347.4
2529 Female, age 94, left hemisphere 269.1
2621 Female, age 67, right hemisphere 261.6
1855 Male, age 76, left hemisphere 239.0
1911 Female, age 85, right hemisphere 222.0
2148 Female, age 91, left hemisphere 205.1

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

498.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 498.4
Samples: 197

Max nTPM: 1250.0
Min nTPM: 175.8
Std nTPM: 168.8
Median nTPM: 465.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 1250.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1004.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 977.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 959.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 941.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 926.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 867.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 832.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 831.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 818.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 810.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 799.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 773.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 757.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 756.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 742.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 739.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 724.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 723.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 721.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 712.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 710.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 701.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 701.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 699.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 690.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 689.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 688.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 686.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 685.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 681.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 674.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 668.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 662.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 661.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 656.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 647.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 644.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 642.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 641.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 637.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 637.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 635.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 632.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 628.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 623.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 621.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 619.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 614.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 603.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 598.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 587.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 586.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 577.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 577.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 569.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 561.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 560.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 557.1
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 554.0
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 545.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 533.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 527.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 527.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 525.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 522.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 521.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 520.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 520.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 518.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 513.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 512.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 511.7
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 509.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 508.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 508.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 505.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 505.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 505.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 504.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 502.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 500.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 499.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 497.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 495.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 493.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 488.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 479.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 478.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 476.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 476.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 474.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 474.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 473.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 472.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 472.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 471.9
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 471.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 465.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 462.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 460.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 457.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 455.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 451.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 450.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 446.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 445.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 442.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 442.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 441.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 438.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 436.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 436.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 435.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 432.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 432.0
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 431.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 430.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 429.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 429.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 425.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 425.4
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 424.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 419.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 419.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 416.4
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 413.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 408.8
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 407.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 406.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 404.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 402.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 400.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 399.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 397.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 395.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 394.8
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 392.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 385.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 385.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 384.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 382.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 382.7
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 382.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 381.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 379.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 376.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 375.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 374.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 372.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 372.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 366.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 365.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 362.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 359.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 357.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 352.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 350.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 350.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 348.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 348.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 346.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 344.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 342.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 338.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 336.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 336.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 333.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 327.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 325.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 325.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 325.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 324.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 324.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 320.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 320.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 318.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 317.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 317.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 313.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 311.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 305.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 303.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 303.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 303.1
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 301.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 297.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 292.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 291.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 291.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 286.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 281.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 273.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 269.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 261.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 257.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 175.8
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1010.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1010.6
FF:10169-103B7 60 years, female 1485.1
FF:10153-102I9 76 years, female 536.1

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