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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:259.2 nTPM
HPA:259.2 nTPM
GTEx:223.4 nTPM
FANTOM5:549.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001401Antibody CAB008670
Glandular cells LowMedium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.2
overview
Male, age 65
Small intestine sample 232
nTPM: 334.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 256
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 189.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 257.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 223.4
Samples: 187

Max nTPM: 688.1
Min nTPM: 95.5
Std nTPM: 84.2
Median nTPM: 202.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 688.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 516.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 454.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 443.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 415.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 414.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 406.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 405.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 399.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 382.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 377.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 370.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 345.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 344.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 342.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 336.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 335.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 334.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 333.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 329.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 329.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 324.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 316.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 313.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 309.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 309.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 307.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 306.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 301.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 300.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 296.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 295.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 293.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 292.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 290.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 290.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 288.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 288.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 286.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 283.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 282.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 282.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 280.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 274.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 272.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 270.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 268.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 265.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 263.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 263.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 262.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 262.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 252.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 252.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 249.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 249.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 249.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 248.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 248.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 244.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 244.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 243.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 240.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 237.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 235.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 235.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 232.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 232.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 228.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 227.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 226.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 226.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 226.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 223.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 223.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 222.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 221.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 220.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 220.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 218.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 216.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 216.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 216.5
GTEX-1192X-2526-SM-59868 50-59 years, male 215.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 215.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 212.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 212.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 211.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 210.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 206.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 205.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 204.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 203.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 202.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 201.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 201.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 199.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 197.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 197.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 195.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 195.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 195.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 192.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 191.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 191.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 190.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 189.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 189.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 188.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 187.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 186.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 185.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 185.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 185.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 184.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 184.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 184.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 183.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 182.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 182.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 182.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 181.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 180.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 179.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 177.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 176.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 176.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 175.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 173.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 171.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 171.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 171.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 170.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 170.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 169.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 169.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 167.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 166.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 166.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 166.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 163.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 160.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 160.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 159.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 158.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 156.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 156.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 155.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 155.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 153.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 152.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 152.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 151.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 150.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 149.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 149.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 148.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 147.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 146.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 145.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 145.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 144.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 143.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 143.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 142.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 138.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 137.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 137.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 137.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 132.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 132.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 131.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 131.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 130.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 130.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 130.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 129.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 127.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 126.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 125.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 124.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 123.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 122.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 117.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 113.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 113.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 95.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

549.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 549.1
FF:10024-101D6 15,40,85 years, mixed 549.1

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