MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:613.1 nTPM
HPA Brain:367.9 nTPM
GTEx:613.1 nTPM
FANTOM5:709.0 Scaled Tags Per Million
Pig:123.8 nTPM
Mouse:522.0 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 367.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 258.9
2411 Female, age 72, unknown 313.2
1827 Male, age 72, unknown 303.4
2019 Male, age 18, unknown 274.4
1870 Female, age 42, unknown 270.2
2219 Male, age 76, both hemispheres 266.5
2828 Female, age 72, unknown 262.9
1833 Male, age 53, unknown 248.7
2666 Male, age 74, left hemisphere 246.6
1830 Male, age 51, unknown 235.5
2586 Male, age 75, left hemisphere 167.4
Dorsal raphe nucleus
nTPM: 331.2
2298 Female, age 72, unknown 396.8
2047 Male, age 72, unknown 353.9
1828 Male, age 53, unknown 323.1
2750 Male, age 76, both hemispheres 322.9
2016 Female, age 72, unknown 259.3
Inferior colliculus
nTPM: 241.6
2097 Female, age 72, unknown 267.1
1890 Male, age 53, unknown 239.0
1848 Female, age 42, unknown 235.3
2849 Male, age 72, unknown 225.0
Median raphe nucleus
nTPM: 365.9
2220 Male, age 76, midline 365.9
Periaquaductal grey, anterior
nTPM: 270.8
1947 Male, age 18, unknown 313.0
1795 Male, age 51, unknown 262.2
2502 Female, age 75, unknown 237.1
Periaquaductal grey, dorsal
nTPM: 243.1
2850 Male, age 76, both hemispheres 285.5
1840 Male, age 53, unknown 255.9
2464 Female, age 72, unknown 226.6
1831 Male, age 72, unknown 204.3
Periaquaductal grey, lateral
nTPM: 253.0
2272 Male, age 74, both hemispheres 267.8
2140 Male, age 76, both hemispheres 253.8
2053 Male, age 18, unknown 237.3
Pretectal area
nTPM: 290.5
1817 Female, age 42, unknown 331.9
1816 Male, age 51, unknown 327.7
1944 Female, age 72, unknown 316.3
2667 Female, age 75, unknown 315.8
2007 Male, age 72, unknown 315.4
2273 Male, age 74, both hemispheres 304.5
2224 Female, age 72, unknown 292.4
1815 Male, age 53, unknown 283.5
2825 Male, age 18, unknown 255.1
2407 Male, age 75, both hemispheres 238.7
2316 Male, age 76, right hemisphere 214.3
Red nucleus
nTPM: 265.7
1821 Female, age 72, unknown 368.8
2725 Female, age 75, unknown 336.6
1954 Female, age 42, unknown 290.3
2823 Male, age 76, right hemisphere 273.1
1865 Male, age 51, unknown 268.0
2503 Female, age 72, unknown 260.7
1904 Male, age 53, unknown 252.1
2785 Male, age 18, unknown 249.9
2769 Male, age 72, unknown 249.2
2227 Male, age 72, unknown 240.7
2588 Male, age 74, left hemisphere 201.5
2584 Male, age 75, left hemisphere 197.5
Substantia nigra
nTPM: 367.9
1916 Female, age 42, unknown 515.7
2241 Male, age 72, unknown 467.7
1941 Male, age 53, unknown 437.7
1851 Male, age 51, unknown 415.1
1889 Female, age 72, unknown 367.7
2409 Female, age 72, unknown 364.4
2699 Male, age 18, unknown 353.6
2665 Male, age 74, both hemispheres 279.6
2590 Female, age 75, unknown 260.9
2583 Male, age 75, right hemisphere 216.2
Superior colliculus
nTPM: 245.1
2587 Male, age 74, left hemisphere 299.1
1895 Male, age 76, right hemisphere 272.4
1796 Male, age 53, unknown 267.9
2668 Female, age 75, unknown 266.5
2087 Female, age 72, unknown 264.8
2261 Male, age 18, unknown 246.3
1839 Male, age 51, unknown 224.0
1913 Female, age 42, unknown 217.7
2664 Male, age 75, both hemispheres 201.7
1995 Male, age 72, unknown 190.2
Ventral tegmental area
nTPM: 330.3
2410 Female, age 72, unknown 389.7
1915 Female, age 42, unknown 389.1
2218 Male, age 76, both hemispheres 374.4
1942 Male, age 51, unknown 289.1
2223 Female, age 72, unknown 288.5
2021 Male, age 53, unknown 251.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 613.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 613.1
Samples: 139

Max nTPM: 1305.5
Min nTPM: 287.0
Std nTPM: 175.1
Median nTPM: 562.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1305.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1163.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1140.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1092.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1015.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1000.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 929.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 917.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 917.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 916.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 911.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 709.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 709.0
FF:10158-103A5 76 years, female 709.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 123.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 122.2
Samples: 4

Max nTPM: 170.6
Min nTPM: 85.0
Sample A Female 170.6
Sample B Female 93.1
Sample C Male 140.0
Sample D Male 85.0
Midbrain
nTPM: 123.9
Samples: 4

Max nTPM: 141.9
Min nTPM: 108.0
Sample A Female 141.9
Sample B Female 118.4
Sample C Male 127.1
Sample D Male 108.0
Periaqueductal gray
nTPM: 98.3
Samples: 3

Max nTPM: 114.5
Min nTPM: 88.6
Sample B Female 91.7
Sample C Male 114.5
Sample D Male 88.6
Superior colliculi
nTPM: 123.6
Samples: 4

Max nTPM: 145.4
Min nTPM: 92.1
Sample A Female 142.8
Sample B Female 92.1
Sample C Male 145.4
Sample D Male 114.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 522.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 522.0
Samples: 4

Max nTPM: 552.6
Min nTPM: 491.4
Sample A Male 552.6
Sample B Male 519.1
Sample C Female 491.4
Sample D Female 524.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
79587726 Antisense, RP_071204_02_D06, Mouse strain C57BL/6J (56 days, male) 10.4
79749602 Antisense, RP_071204_02_D06, Mouse strain C57BL/6J (56 days, male) 6.4
994 Antisense, RP_Baylor_103044, Mouse strain C57BL/6J (56 days, male) 1.6
993 Sense, RPS_Baylor_37046, Mouse strain C57BL/6J (56 days, male) 0.0

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