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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:487.9 nTPM
HPA Brain:326.7 nTPM
GTEx:487.9 nTPM
FANTOM5:1035.6 Scaled Tags Per Million
Pig:146.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

326.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 304.1
1981 Female, age 72, midline 397.6
2048 Male, age 55, midline 301.4
2194 Female, age 79, both hemispheres 298.5
2816 Male, age 47, midline 279.9
2565 Male, age 75, midline 242.9
Cervical spinal cord, dorsal horn
nTPM: 326.7
2173 Female, age 72, unknown 451.0
2296 Male, age 66, both hemispheres 442.0
2069 Male, age 47, both hemispheres 305.3
1877 Male, age 55, unknown 254.2
2721 Male, age 90, both hemispheres 254.0
2297 Male, age 75, both hemispheres 253.5
Cervical spinal cord, ventral horn
nTPM: 295.6
2098 Female, age 72, unknown 396.5
2068 Male, age 55, unknown 310.0
2480 Male, age 75, both hemispheres 282.7
2820 Female, age 79, both hemispheres 276.1
2809 Male, age 90, both hemispheres 266.2
2295 Male, age 66, both hemispheres 241.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

487.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 487.9
Samples: 159

Max nTPM: 935.2
Min nTPM: 257.7
Std nTPM: 100.4
Median nTPM: 475.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 935.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 729.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 714.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 693.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 689.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 678.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 674.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 665.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 662.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 654.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 653.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 649.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 637.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 626.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 623.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 621.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 604.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 599.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 592.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 589.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 588.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 587.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 587.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 583.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 582.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 579.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 579.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 578.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 578.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 578.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 571.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 571.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 569.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 568.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 559.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 558.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 557.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 554.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 549.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 549.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 545.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 543.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 543.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 541.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 541.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 540.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 534.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 534.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 531.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 531.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 530.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 527.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 527.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 525.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 523.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 523.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 519.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 518.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 518.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 518.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 515.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 512.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 509.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 509.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 509.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 508.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 505.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 502.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 501.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 499.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 494.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 492.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 491.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 491.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 491.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 483.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 483.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 482.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 478.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 475.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 474.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 471.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 469.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 469.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 469.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 467.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 465.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 464.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 462.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 461.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 458.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 456.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 454.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 452.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 452.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 450.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 449.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 448.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 448.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 447.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 447.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 446.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 445.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 444.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 444.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 443.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 440.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 437.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 437.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 437.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 436.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 435.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 435.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 427.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 427.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 427.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 422.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 422.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 420.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 418.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 418.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 418.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 417.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 416.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 409.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 409.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 407.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 407.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 407.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 406.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 400.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 396.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 396.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 391.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 384.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 384.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 382.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 382.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 381.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 380.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 373.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 365.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 363.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 360.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 358.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 357.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 357.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 357.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 353.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 350.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 343.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 338.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 329.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 324.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 323.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 319.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 295.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 275.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 257.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1035.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1035.6
FF:10181-103D1 60 years, female 1595.0
FF:10159-103A6 76 years, female 476.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 119.6
Samples: 4

Max nTPM: 123.9
Min nTPM: 114.7
Sample A Female 123.9
Sample B Female 121.0
Sample C Male 114.7
Sample D Male 118.7
Ventral spinal cord
nTPM: 146.0
Samples: 4

Max nTPM: 163.9
Min nTPM: 128.1
Sample A Female 128.1
Sample B Female 163.9
Sample C Male 143.8
Sample D Male 148.3

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