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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:851.8 nTPM
HPA Brain:618.7 nTPM
GTEx:851.8 nTPM
FANTOM5:1388.7 Scaled Tags Per Million
Pig:529.6 nTPM
Mouse:534.9 nTPM
Allen mouse:21.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

618.7
Sample id Sample description nTPM
Amygdala
nTPM: 588.1
2695 Female, age 67, right hemisphere 762.0
2514 Male, age 75, right hemisphere 573.9
2814 Male, age 76, right hemisphere 543.1
1987 Female, age 91, left hemisphere 540.2
2517 Female, age 94, left hemisphere 521.5
Basal amygdala
nTPM: 618.7
2609 Male, age 75, right hemisphere 731.0
2243 Female, age 91, right hemisphere 646.3
2110 Male, age 80, left hemisphere 626.9
2685 Female, age 94, left hemisphere 588.0
2827 Female, age 67, right hemisphere 570.3
1955 Male, age 76, both hemispheres 549.6
Central amygdala
nTPM: 606.7
2515 Male, age 75, right hemisphere 749.2
2239 Male, age 80, left hemisphere 672.9
2826 Female, age 94, left hemisphere 634.4
2701 Female, age 91, right hemisphere 539.8
1905 Male, age 76, both hemispheres 437.1
Corticomedial amygdala
nTPM: 604.8
2829 Male, age 80, left hemisphere 791.0
2428 Male, age 75, right hemisphere 657.2
2242 Female, age 91, right hemisphere 633.6
2240 Male, age 76, both hemispheres 556.2
2535 Female, age 67, right hemisphere 514.3
2429 Female, age 94, left hemisphere 476.8
Lateral amygdala
nTPM: 587.8
2516 Male, age 75, right hemisphere 654.4
2830 Female, age 67, right hemisphere 648.6
2256 Male, age 80, left hemisphere 641.3
1883 Male, age 76, both hemispheres 570.4
2534 Female, age 94, left hemisphere 525.8
2255 Female, age 91, right hemisphere 486.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

851.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 851.8
Samples: 152

Max nTPM: 1597.8
Min nTPM: 164.5
Std nTPM: 200.1
Median nTPM: 842.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1597.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1575.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1525.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1522.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1265.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1254.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1253.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1229.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1182.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1168.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1106.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1087.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1084.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1084.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1054.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1049.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1037.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1035.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1021.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1020.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1019.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1011.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1005.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 999.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 998.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 991.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 990.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 987.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 987.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 981.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 976.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 973.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 972.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 961.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 955.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 953.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 951.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 946.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 944.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 940.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 937.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 932.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 930.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 928.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 926.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 919.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 918.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 916.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 912.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 911.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 907.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 900.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 900.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 899.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 896.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 887.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 883.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 881.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 878.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 877.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 875.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 874.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 872.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 872.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 871.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 868.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 867.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 865.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 862.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 860.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 855.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 855.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 852.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 851.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 851.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 843.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 842.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 837.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 837.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 833.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 829.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 828.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 828.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 827.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 826.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 823.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 819.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 812.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 806.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 803.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 801.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 795.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 793.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 792.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 791.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 785.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 774.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 773.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 772.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 760.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 757.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 755.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 748.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 747.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 746.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 745.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 743.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 739.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 737.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 735.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 734.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 732.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 732.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 729.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 722.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 721.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 717.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 706.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 706.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 705.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 699.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 698.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 697.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 696.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 694.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 690.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 689.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 687.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 685.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 684.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 668.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 668.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 664.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 663.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 655.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 654.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 632.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 632.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 632.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 610.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 608.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 607.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 601.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 600.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 580.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 572.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 549.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 544.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 537.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 525.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 465.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 164.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1388.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1388.7
FF:10151-102I7 76 years, female 1388.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

529.6
Pig sample Sample description nTPM
Amygdala
nTPM: 529.6
Samples: 4

Max nTPM: 716.6
Min nTPM: 374.5
Sample A Female 716.6
Sample B Female 506.2
Sample C Male 520.9
Sample D Male 374.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

534.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 535.0
Samples: 4

Max nTPM: 550.9
Min nTPM: 515.3
Sample A Male 531.0
Sample B Male 550.9
Sample C Female 515.3
Sample D Female 542.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.4
68193012 Antisense, RP_040928_01_B12, Mouse strain C57BL/6J (56 days, male) 26.6
70928292 Antisense, RP_050725_02_C07, Mouse strain C57BL/6J (56 days, male) 19.4
77414654 Antisense, RP_070205_01_H12, Mouse strain C57BL/6J (56 days, male) 18.2

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